View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_low_11 (Length: 498)
Name: NF1133_low_11
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 5e-85; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 7 - 178
Target Start/End: Complemental strand, 6090286 - 6090115
Alignment:
| Q |
7 |
tccaacaatatctgcaaaacacacagaacaaagatataaccggctataaccggtaactatccggtcactagaaaccctactatgtctacactttcatcct |
106 |
Q |
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| T |
6090286 |
tccaaaaatatctgcaaaacacacagaataaagatatcaccggctataaccggtaactatccggtcactagaaaccctactatgtctacactttcatcct |
6090187 |
T |
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| Q |
107 |
ttcatagttcacactttgttttgtttccttgttccaaagaaacaataatctgaactctttgttcagactctc |
178 |
Q |
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| T |
6090186 |
ttcatagttcacactttgttttgtttccttgttccaaagaaacaataatctgaactctttgttcagactctc |
6090115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 207 - 351
Target Start/End: Complemental strand, 6090086 - 6089942
Alignment:
| Q |
207 |
catcatcaaattctcaatcactttgacgtatcaaattttttctgtcatcataataataaacttaacatcaccattaattattataccttctttctttcnn |
306 |
Q |
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| T |
6090086 |
catcatcaaattctcaatcactttgacgtatcaaatttttgctgtcatcataataataaacttaacatcaccattaattattataccttctttctttctt |
6089987 |
T |
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| Q |
307 |
nnnnngtcacttccatcacttcaatccagcttcatctataaaaag |
351 |
Q |
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| T |
6089986 |
tttttgtcacttccatcacttcaatccagcttcatctataaaaag |
6089942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 278 - 351
Target Start/End: Complemental strand, 4512424 - 4512351
Alignment:
| Q |
278 |
cattaattattataccttctttctttcnnnnnnngtcacttccatcacttcaatccagcttcatctataaaaag |
351 |
Q |
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| T |
4512424 |
cattaattattataccttctttctttctttttttgtcacttccatcacttcaatctagcttcatctataaaaag |
4512351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 469
Target Start/End: Complemental strand, 6089855 - 6089824
Alignment:
| Q |
438 |
ctatggctagtgatgagggttttgaaggttac |
469 |
Q |
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| T |
6089855 |
ctatggctagtgatgagggttttgaaggttac |
6089824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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