View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1133_low_13 (Length: 478)
Name: NF1133_low_13
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 57 - 327
Target Start/End: Original strand, 2606784 - 2607056
Alignment:
| Q |
57 |
agcacaaaaataggttaataatcctttattttttaaacaaatcaaacgctcctagctttctacccaaggcgggcggaaaattgtttaaaaaattcaatgg |
156 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2606784 |
agcacaaaaataggttaataatcctttgttttttaaacaaatcaaacgctcctagctttctacccaaggcgggcggaaaattgtttaaaaaattcaatgg |
2606883 |
T |
|
| Q |
157 |
accatataaaatataatacggtgtcaatgtataattgtgagtttcctattattattcttgtataaaatgaacagtgaattgaatttgaagaacaattcat |
256 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2606884 |
accatataaaatataattcggtgtcaatgtataattgtgtgtttcctattattattcttgtataaaatgaacagtgaattgaatttgaagaacaattcat |
2606983 |
T |
|
| Q |
257 |
atcacta--gtggtaaaataggtccagaccaatgggtcggatagtttaagttgtagttttaggatgtgtgagt |
327 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
2606984 |
atcactagggtggtaaaataggtccagaccaatgggtcagatagtttaagtcgtagttttaggatgtgtgagt |
2607056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University