View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_low_17 (Length: 465)
Name: NF1133_low_17
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 163 - 458
Target Start/End: Complemental strand, 51822620 - 51822325
Alignment:
| Q |
163 |
atgaatcaattagaaggaaatctctctgagataaggtttttaagtaatctaatttcacttcatttcttcgaaaacaaattatccggcgagattccaccgg |
262 |
Q |
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| T |
51822620 |
atgaatcaattagaaggaaatctctctgagataaggtttttaagtaatctaatttcacttcaattcttcgaaaacaaattatccggcgagattccaccgg |
51822521 |
T |
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| Q |
263 |
agataggtgagtttaaaaacctccgggaactgtctctttacagaaacagattaacaggtccaattcctcagaagactggatcatggtcagaatttgaata |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51822520 |
agataggtgagtttaaaaacctccgggaactgtctctttacagaaacagattaacaggtccaattcctcagaagactggatcatggtcagaatttgaata |
51822421 |
T |
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| Q |
363 |
catcgacgtttcggagaatttcttaacgggttcaattccaccaaacatgtgcaacaaaggaaaaatgtacgcacttcttcttcttcagaataatct |
458 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51822420 |
catcgacgtttcggagaatttcttaacgggttcaattccaccaaacatgtgcaacaaaggaaaaatgtacgcacttcttcttcttcagaacaatct |
51822325 |
T |
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