View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_low_19 (Length: 451)
Name: NF1133_low_19
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 98 - 259
Target Start/End: Complemental strand, 23627396 - 23627232
Alignment:
| Q |
98 |
ataggagaacctctcaa---gagactcacttttttctattaacaaatcaaaataaacacatatttttgaatataaaaattgaaaatgttttcgcaaagta |
194 |
Q |
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| T |
23627396 |
ataggagaacctctcaacaagagactcacttttttctattaacaaatcaaaataaacacatatttttgaatataaaaattgaaaatgttttcgcaaagta |
23627297 |
T |
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| Q |
195 |
aactcagagtattgtcctgtagggaaataatagtttatgaccgatgatgagacttcttattgaaa |
259 |
Q |
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| T |
23627296 |
aactcaaagtattgtcctgtagggaaataatagtttatgaccgatgatgagacttcttattgaaa |
23627232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 281 - 422
Target Start/End: Complemental strand, 23626840 - 23626695
Alignment:
| Q |
281 |
tcataattgtcaagaatacttttgtcac----cggctcctttaatttgtaaccatcgactctgatactacttgttgtggagttcggaaagcgccgagagc |
376 |
Q |
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| T |
23626840 |
tcatcattgtcaagaatacttttgtcattagtcggcccctttaattagtaaccatcgactctgatactatttgttgtggagttcgggaagcgccgagagc |
23626741 |
T |
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| Q |
377 |
ggtaatgttgaactaatcactcccatttgtgattccaacaatcttc |
422 |
Q |
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| T |
23626740 |
ggtaatgttgaactaatcactccaatttgtgattccaacaatcttc |
23626695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 23627453 - 23627407
Alignment:
| Q |
17 |
attatactaaaaaactcagcctcaaaagaggattgaataccaggtag |
63 |
Q |
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| T |
23627453 |
attacactaaaaaactcagcctcaaaagaggattgaataccaggtag |
23627407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 13921409 - 13921454
Alignment:
| Q |
152 |
acatatttttgaatataaaaattgaaaatgttttcgcaaagtaaac |
197 |
Q |
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| T |
13921409 |
acatattttagaaaataaaaataggaaatgttttcgcaaagtaaac |
13921454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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