View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_low_21 (Length: 439)
Name: NF1133_low_21
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_21 |
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| [»] scaffold0164 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 30 - 431
Target Start/End: Complemental strand, 9798388 - 9797987
Alignment:
| Q |
30 |
cattcccctcaaatcagacgcatacctgttctttatgtggtagaaatgggcataccattgaaacttgttataggaaacattgttttcatccaaattttgg |
129 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9798388 |
cattcccctcaaatcagacgcatacctgttctttttgtggtagaaatgggcataccattgaaacttgttataggaaacattgttttcatccaaattttgg |
9798289 |
T |
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| Q |
130 |
aaagaattctgctatggaaagtcactcttcccttgagacgaatgaagacagggaggacattgatgattcaaggagtgtaaaaggaactgaatcttatggt |
229 |
Q |
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| T |
9798288 |
aaagaattctgctatggcaagtcactcttcccttgagacgaatgaagacagggaggacattgatgattcaaggagtgtaaaaggaactgaatcttatggt |
9798189 |
T |
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| Q |
230 |
ttcaccaaagatcaatatgagtagttggtgaatctgcttcagtgttcatgatctgcagctaatcaatcagcatcttctagcaaggttaatctagtttcac |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9798188 |
ttcaccaaagatcaatatgagtagttggtgaatctgcttcagtgttcatgatctgcagctaatcaatcagcatcttctagcaaggttaatctagtttcac |
9798089 |
T |
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| Q |
330 |
atgttacatcaggtataacaaagttctcttattccttgaatcactcaaatattggatcatggattgtggattctggtgcaagtgaccatattggttcatc |
429 |
Q |
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| T |
9798088 |
atgttacatcaggtataacaaagttctcttattccttgaatcactcaaatattggatcatggattgtggattctggtgcaagtgaccatattggttcatc |
9797989 |
T |
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| Q |
430 |
tc |
431 |
Q |
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| T |
9797988 |
tc |
9797987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 144
Target Start/End: Complemental strand, 6755130 - 6755046
Alignment:
| Q |
60 |
ctttatgtggtagaaatgggcataccattgaaacttgttataggaaacattgttttcatccaaattttggaaagaattctgctat |
144 |
Q |
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| T |
6755130 |
ctttttgtggtagaaatggccacacaattgaaagctgttataagaaacatggttttcctccacattttggtaagaaacctgctat |
6755046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 18030 - 17954
Alignment:
| Q |
56 |
tgttctttatgtggtagaaatgggcataccattgaaacttgttataggaaacattgttttcatccaaattttggaaa |
132 |
Q |
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| T |
18030 |
tgttctttctgtggcagagatggccacaccattgatatatgttataggaaacatggttttcctccaaattatggaaa |
17954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 15191944 - 15192020
Alignment:
| Q |
56 |
tgttctttatgtggtagaaatgggcataccattgaaacttgttataggaaacattgttttcatccaaattttggaaa |
132 |
Q |
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| T |
15191944 |
tgttctttctgtggcagagatggccacaccattgatatatgttataggaaacatggttttcctccaaattatggaaa |
15192020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 1615982 - 1615903
Alignment:
| Q |
170 |
aatgaagacagggaggacattgatgattcaaggagtgtaaaaggaactgaatcttatggtttcaccaaagatcaatatga |
249 |
Q |
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| T |
1615982 |
aatgaagaaagggaggacattgatgattcaaagatttacaaaggcaatgattcatatggtttcaccaaagaacaacatga |
1615903 |
T |
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