View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_low_22 (Length: 432)
Name: NF1133_low_22
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 383
Target Start/End: Original strand, 33380134 - 33380509
Alignment:
| Q |
8 |
agattatacttgtacatgtagatgtcacgaccaggtaccaaacgacgtttacagagaaagcaagagcgtaagaaatcagggttgtgagtcatatcagctg |
107 |
Q |
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| T |
33380134 |
agattatacttgtacatgtagatgtcacgaccaggtaccaaacgacgtttacagagaaagcaagagcgtaagaaatcagggttgtgagtcatatcagctg |
33380233 |
T |
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| Q |
108 |
aatttcttctaaggtttctaggtgataccatggacataaccctgctctgatctgaaccgttgattccaggagaagttggtggatatggaccgtacggacc |
207 |
Q |
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| T |
33380234 |
aatttcttctaaggtttctaggtgataccatggacataaccctgctctgatctgaaccgttgattccaggagaagttggtggatatggaccgtacggacc |
33380333 |
T |
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| Q |
208 |
aacaccaggtccatgacggttgaaaaggttgttgttgttattgggatcttcttctgttgttactgtgttcagatcgaaggttatttctgacatgcttgtt |
307 |
Q |
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| T |
33380334 |
aacaccaggtccatgacggttgaaaaggttgttgttgttattgggatcttcttctgttgttactgtgttcagatcgaaggttatttctgacatacttgtt |
33380433 |
T |
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| Q |
308 |
gttcttttcattggtggacgaggtctcttccctaacatcatcttcttacttcttttgtattactaaaaccttactt |
383 |
Q |
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| T |
33380434 |
gttcttttcattggtggacgaggtctcttccctaacatcatcttcttacttcttttgtattagtaaaaccttactt |
33380509 |
T |
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