View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_low_24 (Length: 413)
Name: NF1133_low_24
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 246 - 385
Target Start/End: Complemental strand, 338344 - 338207
Alignment:
| Q |
246 |
acctgttactttgttgtctcactataaatagactatccacattgannnnnnnnnnnnnnnnnaaattaagcatgatcaatcatcatgggattgtgtatgc |
345 |
Q |
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| T |
338344 |
acctgttactttgttgtctcactataaatagactatccacattgatttttattttttttt--aaattaagcatgatcaatcatcatgggattgtgtatgc |
338247 |
T |
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| Q |
346 |
tacacatgattttacacaacaaaaagataataacattttt |
385 |
Q |
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| T |
338246 |
tacacatgattttacacaacaaaaagataataacattttt |
338207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 338571 - 338486
Alignment:
| Q |
48 |
ttatacttaaggaaatcttgatgaatctctgaaggaggtaccgaatagcagaaacattttatt----atatgcctaagtgtagcaa |
129 |
Q |
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| T |
338571 |
ttatacataagggaatcttgatgaatctctgaaggaggtaccgaatagcagaaacattttattatatatatgcctaagtgtagcaa |
338486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 338391 - 338355
Alignment:
| Q |
224 |
catagtctcgatttcatgtgttacctgttactttgtt |
260 |
Q |
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| T |
338391 |
catagtctcgttttcatgtgttacctgttactttgtt |
338355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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