View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_low_25 (Length: 410)
Name: NF1133_low_25
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 113 - 400
Target Start/End: Complemental strand, 3238917 - 3238630
Alignment:
| Q |
113 |
aggaaaggttcctcttaaatcacatgcattgaactcatcccttttattgaattcataattgtgtacaatatttaattattcannnnnnnatgaccaaagt |
212 |
Q |
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| T |
3238917 |
aggaaaggttcctcttaaatcacatgcattgaactaatcccttttattgaattcataattgtgtacaatatttaattattcatttttttatgaccaaagt |
3238818 |
T |
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| Q |
213 |
ttaatcatgcatattcatattgtgacaggcaacaaaagcattaaaattaggatttttgcttctacattttgccattctaataggctaccatattgagctt |
312 |
Q |
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| T |
3238817 |
ttaatcatgcatattcatattgtgacaggcaacaaaagcattaaaattaggatttttgcttctacattttgccattctaataggctaccatattgagctt |
3238718 |
T |
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| Q |
313 |
gggtttgtgattccaccatgacgattaaagggatctacaaaagttttaagtacatatcccaaatttttggtaatttatctatcctttg |
400 |
Q |
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| T |
3238717 |
gggtttgtgattccaccatgacgattaaagggatctacaaaagttttaagtacatatcccaaatttttggtaatttatctatcctttg |
3238630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 3239033 - 3238935
Alignment:
| Q |
30 |
aatatgacaacaaattaattaatcatctttgtattcttataatcaaataccaatcttcaatcattcatattatagactaatataggaaaggttcctctt |
128 |
Q |
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| T |
3239033 |
aatatgacaacaaattaattaatcatctttgtattcttataatcaaataccaatcttcaatcattcatattatagactaatataggaaaggttcctctt |
3238935 |
T |
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