View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_low_27 (Length: 387)
Name: NF1133_low_27
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 30 - 279
Target Start/End: Complemental strand, 31078181 - 31077932
Alignment:
| Q |
30 |
gacgcatgagtataaaccatatccttcacctcatcgtaactaactatttctgattttccggtaatctctttgagaatttcattctccacatgactatgct |
129 |
Q |
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| T |
31078181 |
gacgcatgagtataaaccatatccttcacctcatcgtaactaactatttctgattttccggtaatctctttgagaatttcattctccacatgactatgct |
31078082 |
T |
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| Q |
130 |
tagagagtaaccaaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatccga |
229 |
Q |
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| T |
31078081 |
tagagagtagccaaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatccga |
31077982 |
T |
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| Q |
230 |
atgacccgaacttaaaaaccgcgataaaagatcaactgattccaaagttg |
279 |
Q |
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| T |
31077981 |
atgacccgaacttaaaaaccgcgataaaagatcaactgattccaaagttg |
31077932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 33 - 274
Target Start/End: Complemental strand, 31132204 - 31131963
Alignment:
| Q |
33 |
gcatgagtataaaccatatccttcacctcatcgtaactaactatttctgattttccggtaatctctttgagaatttcattctccacatgactatgcttag |
132 |
Q |
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| T |
31132204 |
gcatgagtgtaaaccatattcttcacctcatcgttactaactatcattgattttctagtaatctctttaagaatctcattctctacatgactatgcttag |
31132105 |
T |
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| Q |
133 |
agagtaaccaaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatccgaatg |
232 |
Q |
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| T |
31132104 |
agattaacaaaaagaaccacgtgagtgcagctgaagttgtatctctcccagcaagaataaagcttatcacaatatcaactacaaaagattcgtccgaatg |
31132005 |
T |
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| Q |
233 |
acccgaacttaaaaaccgcgataaaagatcaactgattccaa |
274 |
Q |
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| T |
31132004 |
accagaacttaaaaatcgcgacaaaatatccaccgattccaa |
31131963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 32 - 274
Target Start/End: Complemental strand, 31127497 - 31127255
Alignment:
| Q |
32 |
cgcatgagtataaaccatatccttcacctcatcgtaactaactatttctgattttccggtaatctctttgagaatttcattctccacatgactatgctta |
131 |
Q |
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||||||||| |||||||||||||||||||||| |||| |||| |||| |||||||| ||| || || ||||| |||||||||||||||||||||||| |
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| T |
31127497 |
cgcatgagtgtaaaccatatccttcacctcattgtaattaaccgtttccgattttcccataacttcctttagaatctcattctccacatgactatgctta |
31127398 |
T |
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| Q |
132 |
gagagtaaccaaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatccgaat |
231 |
Q |
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| T |
31127397 |
gagagtaaccaaaagaaccaagtgagtgcagctgaagttgtatctctcccagcaagaataaagcttattacaatatcaacaacaaaagattcatctgaat |
31127298 |
T |
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| Q |
232 |
gacccgaacttaaaaaccgcgataaaagatcaactgattccaa |
274 |
Q |
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| T |
31127297 |
gacctgaacttaaaaatcgtgatagaatatccaatgattccaa |
31127255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 307 - 377
Target Start/End: Complemental strand, 31077904 - 31077834
Alignment:
| Q |
307 |
ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctcgatccctatg |
377 |
Q |
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| T |
31077904 |
ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctcgatccctatg |
31077834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 31128902 - 31128854
Alignment:
| Q |
307 |
ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttcttt |
355 |
Q |
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| T |
31128902 |
ccctaacgattcttgtggcgagtcctcttacttcaacgacggcttcttt |
31128854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 367
Target Start/End: Complemental strand, 31127222 - 31127162
Alignment:
| Q |
307 |
ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctc |
367 |
Q |
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| T |
31127222 |
ccctaacgattcttgtggcgagtcctcttacttcagcagcagcttcttttaaccgtcgctc |
31127162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 368
Target Start/End: Complemental strand, 31131930 - 31131869
Alignment:
| Q |
307 |
ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctcg |
368 |
Q |
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| T |
31131930 |
ccctaacaatttttgtggcgagcccccttacttcagcgacagcttctttcaaccgtcgctcg |
31131869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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