View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_low_28 (Length: 365)
Name: NF1133_low_28
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 41 - 200
Target Start/End: Complemental strand, 35284522 - 35284363
Alignment:
| Q |
41 |
gaacccaaaacattcccctcaagatatgtgagtacaatgctgtgagattctttcattttcttgtgctgttttcttttactttctttcttaaacggcctct |
140 |
Q |
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| T |
35284522 |
gaacccaaaacattcccctcaagatatgtgagtacaatgctgtgagattctttcattttcttgcgctgttttcttttactttctttcttaaacggcctct |
35284423 |
T |
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| Q |
141 |
tatccgtattctatgacatgcatgtatatctctataggcaacagatgcaaggatcctccg |
200 |
Q |
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| T |
35284422 |
tatccgtattctatggcatgcatgtatatctctataggcaacagatgcaaggatcctccg |
35284363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 269 - 362
Target Start/End: Complemental strand, 35284362 - 35284269
Alignment:
| Q |
269 |
tattcatatattactcaattttcaggccccaaacattggtcctataatggacaatacctatcaaataattcgggatggatatattattcgacat |
362 |
Q |
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| T |
35284362 |
tattcatatattactcaattttcaggccccaaacattggtgctataatggacaatacctatcaaataattcgggatggatattctattcgacat |
35284269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 197 - 350
Target Start/End: Complemental strand, 35242124 - 35241963
Alignment:
| Q |
197 |
tccggtcagagtcaggttatatatgatg----aatgttcaatgttagttcatggttcttggtttcata----gtgcaacctattcatatattactcaatt |
288 |
Q |
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| T |
35242124 |
tccggtcagagtcaggttatatatgatggctaaatgttcaatgttaataactggttcttagtttcatatatagtgcaacgcagtcatatattactcaatt |
35242025 |
T |
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| Q |
289 |
ttcaggccccaaacattggtcctataatggacaatacctatcaaataattcgggatggatat |
350 |
Q |
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| T |
35242024 |
ttcaggccccaaacattggtgctataatggacaatacccctcaaatgattcgggatggatat |
35241963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 201 - 350
Target Start/End: Complemental strand, 35272262 - 35272101
Alignment:
| Q |
201 |
gtcagagtcaggttatatatgatg----aatgttcaatgttagttcatggttcttggtttcata----gtgcaacctattcatatatta----ctcaatt |
288 |
Q |
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| T |
35272262 |
gtcagagtcaggttatatatgatggctaaatgttcaatgttaataactggttcttggtttcatatatagtgcaacacagtcatatattaattactcaatt |
35272163 |
T |
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| Q |
289 |
ttcaggccccaaacattggtcctataatggacaatacctatcaaataattcgggatggatat |
350 |
Q |
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| T |
35272162 |
ttcaggcccaaaacgttggtcctataatggaaaatacccctcaaataattccggatggatat |
35272101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 204 - 344
Target Start/End: Complemental strand, 35247754 - 35247606
Alignment:
| Q |
204 |
agagtcaggttatatatgatg----aatgttcaatgttagttcatggttcttggtttcat----agtgcaacctattcatatattactcaattttcaggc |
295 |
Q |
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| T |
35247754 |
agagtcaggttatatataatggctaaatgttcaatgttaatcaatggttcttggtttcattcatagcgcaacacactcatatattacttaattttcaggc |
35247655 |
T |
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| Q |
296 |
cccaaacattggtcctataatggacaatacctatcaaataattcgggat |
344 |
Q |
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|||||| ||||| ||| ||||||||||||| |||||||||||||||| |
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| T |
35247654 |
cccaaaagttggtgctacaatggacaatacccctcaaataattcgggat |
35247606 |
T |
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