View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1133_low_31 (Length: 360)

Name: NF1133_low_31
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1133_low_31
NF1133_low_31
[»] chr3 (2 HSPs)
chr3 (35-347)||(12371467-12371777)
chr3 (32-68)||(12371831-12371867)
[»] chr5 (3 HSPs)
chr5 (31-347)||(26682222-26682537)
chr5 (104-347)||(29755662-29755904)
chr5 (32-142)||(27393861-27393971)
[»] scaffold1964 (1 HSPs)
scaffold1964 (32-344)||(218-529)
[»] chr2 (3 HSPs)
chr2 (32-344)||(2974196-2974507)
chr2 (70-168)||(14994274-14994372)
chr2 (246-324)||(14994449-14994527)
[»] chr4 (1 HSPs)
chr4 (42-347)||(12354375-12354679)
[»] chr6 (2 HSPs)
chr6 (116-347)||(30141666-30141896)
chr6 (32-122)||(17392832-17392922)
[»] chr8 (2 HSPs)
chr8 (202-347)||(20529014-20529158)
chr8 (31-324)||(42079667-42079959)
[»] scaffold0013 (1 HSPs)
scaffold0013 (76-166)||(43335-43425)
[»] scaffold0019 (1 HSPs)
scaffold0019 (52-119)||(73677-73744)


Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 35 - 347
Target Start/End: Complemental strand, 12371777 - 12371467
Alignment:
Q  35 caactcgtgttcggttgcttgataaaggcattaattgtcccactcagtgtgtaagttgtgactctaatcatgaggatttagctcatatatttttcgattg 134  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  12371777 caactcgtgttcggttgcttgataaaggcgttaattgtcccactcagtgtgtaagttgtgactctaatcatgaggatttagctcatatatttttcgattt 12371678  T
Q  135 cccttttgctgttcaggtattgtctatggcaggtttatggcgagagattcaaggtgtggtagcaccgtcaccttcggctattgaagctatctttgtttta 234  Q
    |||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||| |||| |||||||||||||||||||||| ||||||||||||    
T  12371677 cccttttgctgttcgggtatggtctatggcaggtttatggcgag-gactcaaggtgtggcagcagcgtcaccttcggctattgaagcaatctttgtttta 12371579  T
Q  235 ctacagactcctatctgccacactttctcaacggttggctgcaatattttggagtctttggaaacataggaatataaaggtgtgggaagatgttacggaa 334  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12371578 ctacagtct-ctatctgccacactttctcaacggttggctgcaatattttggagtctttggaaacataggaatataaaggtgtgggaagatgttacggaa 12371480  T
Q  335 acttgtgcaacag 347  Q
    |||||||||||||    
T  12371479 acttgtgcaacag 12371467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 12371867 - 12371831
Alignment:
Q  32 taccaactcgtgttcggttgcttgataaaggcattaa 68  Q
    |||||||||||||||||||||||||||||||| ||||    
T  12371867 taccaactcgtgttcggttgcttgataaaggcgttaa 12371831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 31 - 347
Target Start/End: Original strand, 26682222 - 26682537
Alignment:
Q  31 ctaccaactcgtgttcggttgcttgataaaggcattaattgtcccactcagtgtgtaagttgtgactctaatcatgaggatttagctcatatatttttcg 130  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  26682222 ctaccaactcgtgttcggtttcttgataaaggcgttaattgtcccactcagtgtgaaagttgtgactctaatcatgaggatttaactcatatatttttcg 26682321  T
Q  131 attgcccttttgctgttcaggtattgtctatggcaggtttatggcgagagattcaaggtgtggtagcaccgtcaccttcggctattgaagctatctttgt 230  Q
    ||||||||||| |||||| ||||| |||||| ||| |||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||||     
T  26682322 attgccctttttctgttcgggtatggtctatcgcaagtttatggcgagagattcaaggtgtggtagcagcatcaccttcaactattgaagctatctttgc 26682421  T
Q  231 tttactacagactcctatctgccacactttctcaacggttggctgcaatattttggagtctttggaaacataggaatataaaggtgtgggaagatgttac 330  Q
    ||| |||||  || |||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  26682422 tttgctacactct-ctatccaccacactttttcaacggttggctgcaatattttggagtctttggaaacataggaatataaaggtgtaggaagatgttat 26682520  T
Q  331 ggaaacttgtgcaacag 347  Q
    ||||||||| |||||||    
T  26682521 ggaaacttgcgcaacag 26682537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 104 - 347
Target Start/End: Complemental strand, 29755904 - 29755662
Alignment:
Q  104 atgaggatttagctcatatatttttcgattgcccttttgctgttcaggtattgtctatggcaggtttatggcgagagattcaaggtgtggtagcaccgtc 203  Q
    ||||||||||| ||||| ||||||| || |||||||||||||||||||| | |||||||||| |||||||||||||| ||||||||| |||  || ||||    
T  29755904 atgaggatttaactcatgtattttttgagtgcccttttgctgttcaggtctggtctatggcaagtttatggcgagaggttcaaggtgcggtgacatcgtc 29755805  T
Q  204 accttcggctattgaagctatctttgttttactacagactcctatctgccacactttctcaacggttggctgcaatattttggagtctttggaaacatag 303  Q
     |||||||| ||||| || || |||| ||| |||||  ||  ||||||  || || || |||||| |||| ||||| |||||||| |||||||| |||||    
T  29755804 gccttcggccattgaggccatttttgctttgctacaatct-ttatctgttacgctctcccaacggctggcagcaattttttggagcctttggaagcatag 29755706  T
Q  304 gaatataaaggtgtgggaagatgttacggaaacttgtgcaacag 347  Q
    ||| |||||||||||||||||  ||||||| |||||||||||||    
T  29755705 gaacataaaggtgtgggaagacattacggagacttgtgcaacag 29755662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 32 - 142
Target Start/End: Complemental strand, 27393971 - 27393861
Alignment:
Q  32 taccaactcgtgttcggttgcttgataaaggcattaattgtcccactcagtgtgtaagttgtgactctaatcatgaggatttagctcatatatttttcga 131  Q
    ||||||| |||||||  || ||| |||||||| || | ||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27393971 taccaacccgtgttctatttcttaataaaggcgttcaatgtcctacttagtgtgtaagttgtgactctaatcatgaggattgagctcatatatttttcga 27393872  T
Q  132 ttgcccttttg 142  Q
     || |||||||    
T  27393871 atgtccttttg 27393861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1964 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: scaffold1964
Description:

Target: scaffold1964; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 32 - 344
Target Start/End: Original strand, 218 - 529
Alignment:
Q  32 taccaactcgtgttcggttgcttgataaaggcattaattgtcccactcagtgtgtaagttgtgactctaatcatgaggatttagctcatatatttttcga 131  Q
    |||||||||||||||||||| | ||||||||  || | |||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| ||    
T  218 taccaactcgtgttcggttgttggataaaggtgttcaatgtcccactcagtgcgtaagttgtgactctaatcatgaggatttatctcatgtattttttga 317  T
Q  132 ttgcccttttgctgttcaggtattgtctatggcaggtttatggcgagagattcaaggtgtggtagcaccgtcaccttcggctattgaagctatctttgtt 231  Q
     ||| ||||||| ||||||||||  |||||||||||||||||||  ||||||||||||||| | ||| ||||||| ||||| ||||| || || ||||      
T  318 gtgctcttttgcagttcaggtatgatctatggcaggtttatggcatgagattcaaggtgtgttggcatcgtcaccctcggccattgaggcaatttttgca 417  T
Q  232 ttactacagactcctatctgccacactttctcaacggttggctgcaatattttggagtctttggaaacataggaatataaaggtgtgggaagatgttacg 331  Q
    ||  || |  ||  ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||  ||||||||||| |||| || |||    
T  418 ttgttatattct-ttatctgccacactttctcaacggttggttgcaatattttggagtctttggaagcataggaacttaaaggtgtggcaagacgtcacg 516  T
Q  332 gaaacttgtgcaa 344  Q
    |||||||| ||||    
T  517 gaaacttgagcaa 529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 32 - 344
Target Start/End: Complemental strand, 2974507 - 2974196
Alignment:
Q  32 taccaactcgtgttcggttgcttgataaaggcattaattgtcccactcagtgtgtaagttgtgactctaatcatgaggatttagctcatatatttttcga 131  Q
    ||||||| |||||||||||| | ||||||||  || | | ||| |||| ||| |||||||||||||||||||||||||||||| ||||| ||||||| ||    
T  2974507 taccaacccgtgttcggttgttggataaaggtgttcaatttcctactcggtgcgtaagttgtgactctaatcatgaggatttatctcatgtattttttga 2974408  T
Q  132 ttgcccttttgctgttcaggtattgtctatggcaggtttatggcgagagattcaaggtgtggtagcaccgtcaccttcggctattgaagctatctttgtt 231  Q
     ||| ||||||| ||||||||||  |||| || |||||||||||  ||||||||||||| | | ||| ||||| | ||||| ||||| || || ||||      
T  2974407 gtgctcttttgcagttcaggtatgctctacggtaggtttatggcatgagattcaaggtgcgttggcatcgtcaacctcggccattgaggcaatttttgcg 2974308  T
Q  232 ttactacagactcctatctgccacactttctcaacggttggctgcaatattttggagtctttggaaacataggaatataaaggtgtgggaagatgttacg 331  Q
    ||  ||||  ||  ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||  |||||||||||||||| || ||     
T  2974307 ttgttacattctt-tatctgccacactttctcaacggctggctgcaatattttggagtctttggaagcataggaacttaaaggtgtgggaagacgtcaca 2974209  T
Q  332 gaaacttgtgcaa 344  Q
    |||||||||||||    
T  2974208 gaaacttgtgcaa 2974196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 70 - 168
Target Start/End: Original strand, 14994274 - 14994372
Alignment:
Q  70 tgtcccactcagtgtgtaagttgtgactctaatcatgaggatttagctcatatatttttcgattgcccttttgctgttcaggtattgtctatggcaggt 168  Q
    ||||| ||||||||||| ||||||||||||||| |||||||||||||||| || |||||||| || | ||||||| |||  || | |||||||||||||    
T  14994274 tgtcctactcagtgtgttagttgtgactctaattatgaggatttagctcacatctttttcgaatgtcattttgctattccagtttggtctatggcaggt 14994372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 324
Target Start/End: Original strand, 14994449 - 14994527
Alignment:
Q  246 tatctgccacactttctcaacggttggctgcaatattttggagtctttggaaacataggaatataaaggtgtgggaaga 324  Q
    |||| ||||||||||||||| || || ||||| ||||||||||| ||||||| ||||||||| | || ||||| |||||    
T  14994449 tatccgccacactttctcaaaggatgactgcactattttggagtatttggaagcataggaatgtcaaagtgtgcgaaga 14994527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 42 - 347
Target Start/End: Original strand, 12354375 - 12354679
Alignment:
Q  42 tgttcggttgcttgataaaggcattaattgtcccactcagtgtgtaagttgtgactctaatcatgaggatttagctcatatatttttcgattgccctttt 141  Q
    |||||| ||| | ||||||||  || ||||| ||||||||||||||| |||||| |||||||||||||||||| ||||| ||||||| || |||||||||    
T  12354375 tgttcgtttgttggataaaggtgttcattgtaccactcagtgtgtaaattgtgattctaatcatgaggatttaactcatgtattttttgagtgccctttt 12354474  T
Q  142 gctgttcaggtattgtctatggcaggtttatggcgagagattcaaggtgtggtagcaccgtcaccttcggctattgaagctatctttgttttactacaga 241  Q
      ||||||||| | ||||||||||||||||||||||||| ||||||||| |||  || |||| |||||||| ||||| || || |||| |||  ||||      
T  12354475 tttgttcaggtctggtctatggcaggtttatggcgagaggttcaaggtgcggtgacatcgtcgccttcggccattgaggccatttttgctttgttacaat 12354574  T
Q  242 ctcctatctgccacactttctcaacggttggctgcaatattttggagtctttggaaacataggaatataaaggtgtgggaagatgttacggaaacttgtg 341  Q
    ||  ||| ||  || || || |||||| |||| ||||| |||||||| ||||| || |||||||| || ||||||||||||||  ||||||| |||||||    
T  12354575 ct-ttatatgttacgctctcccaacggctggcggcaattttttggagcctttgaaagcataggaacatcaaggtgtgggaagacattacggagacttgtg 12354673  T
Q  342 caacag 347  Q
    ||||||    
T  12354674 caacag 12354679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 116 - 347
Target Start/End: Complemental strand, 30141896 - 30141666
Alignment:
Q  116 ctcatatatttttcgattgcccttttgctgttcaggtattgtctatggcaggtttatggcgagagattcaaggtgtggtagcaccgtcaccttcggctat 215  Q
    ||||| ||||||| || |||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||| |||| || |||| |||||||| ||    
T  30141896 ctcatgtattttttgagtgcccttttgctgttcaggtctggtctatggcaggtttatggcgagaggttcaaggtgcggtaacatcgtcgccttcggccat 30141797  T
Q  216 tgaagctatctttgttttactacagactcctatctgccacactttctcaacggttggctgcaatattttggagtctttggaaacataggaatataaaggt 315  Q
    ||| || || |||| |||  ||||  ||  ||||||  || || || |||||| |||| ||||| |||||||| |||||||| |||||||| |||||| |    
T  30141796 tgaggccatttttgctttgttacaatct-ttatctgttacgctctcccaacggctggcagcaattttttggagcctttggaagcataggaacataaagtt 30141698  T
Q  316 gtgggaagatgttacggaaacttgtgcaacag 347  Q
    |||||||||  ||||||| |||||||||||||    
T  30141697 gtgggaagacattacggagacttgtgcaacag 30141666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 17392922 - 17392832
Alignment:
Q  32 taccaactcgtgttcggttgcttgataaaggcattaattgtcccactcagtgtgtaagttgtgactctaatcatgaggatttagctcatat 122  Q
    |||||||| |||||||  | ||||||||||||||| | ||||| ||  ||||||| |||||||||||||||||||| ||||| | ||||||    
T  17392922 taccaacttgtgttcgacttcttgataaaggcattcaatgtcctacctagtgtgttagttgtgactctaatcatgatgattttggtcatat 17392832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 202 - 347
Target Start/End: Complemental strand, 20529158 - 20529014
Alignment:
Q  202 tcaccttcggctattgaagctatctttgttttactacagactcctatctgccacactttctcaacggttggctgcaatattttggagtctttggaaacat 301  Q
    |||| |||||||||||| |||||||||| ||| |||||| ||| ||||||||||||| |||||||||||||||||||  |||||  ||||||| || |||    
T  20529158 tcactttcggctattgaggctatctttgctttgctacagtctc-tatctgccacactctctcaacggttggctgcaagtttttgatgtctttgaaagcat 20529060  T
Q  302 aggaatataaaggtgtgggaagatgttacggaaacttgtgcaacag 347  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||    
T  20529059 aggaatataaaggtgtgggaagatgttaaagaaacttgtgcaacag 20529014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 324
Target Start/End: Original strand, 42079667 - 42079959
Alignment:
Q  31 ctaccaactcgtgttcggttgcttgataaaggcattaattgtcccactcagtgtgtaagttgtgactctaatcatgaggatttagctcatatatttttcg 130  Q
    |||||||| ||||||||  | |||||||||||| || | | | | || || ||||| || ||||| ||||||||||| ||||||||||| || |||| |     
T  42079667 ctaccaacccgtgttcgacttcttgataaaggcgttcaatattcgacccaatgtgttagctgtgattctaatcatgaagatttagctcacattttttcca 42079766  T
Q  131 attgcccttttgctgttcaggtattgtctatggcaggtttatggcgagagattcaaggtgtggtagcaccgtcaccttcggctattgaagctatctttgt 230  Q
    | || ||||||||||||||||| | ||||||| ||||| ||||||  || |||||   ||| |||||| | || |||||||||||||||| ||| ||       
T  42079767 aatgtccttttgctgttcaggtttggtctatgacaggtatatggcatgaaattcagaatgtagtagcaacatctccttcggctattgaagttattttctc 42079866  T
Q  231 tttactacagactcctatctgccacactttctcaacggttggctgcaatattttggagtctttggaaacataggaatataaaggtgtgggaaga 324  Q
     ||  | ||  ||  ||||| ||||||||||| || || ||||| |||| ||||||||| ||||||| ||||||||| | || |||||||||||    
T  42079867 ctttttgcattct-ttatctaccacactttcttaaaggatggctacaattttttggagtatttggaagcataggaatgtcaaagtgtgggaaga 42079959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 43335 - 43425
Alignment:
Q  76 actcagtgtgtaagttgtgactctaatcatgaggatttagctcatatatttttcgattgcccttttgctgttcaggtattgtctatggcag 166  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||||||| ||||| | ||| |||||||    
T  43335 actcagtgtgttagttgtgagtctaatcatgaggatttagctcacatattcttcgaatgtccttttgctgtacaggtttggtcgatggcag 43425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 73744 - 73677
Alignment:
Q  52 cttgataaaggcattaattgtcccactcagtgtgtaagttgtgactctaatcatgaggatttagctca 119  Q
    |||||||||||| || | ||||| || |||||||| || ||||| ||||||||||| |||||||||||    
T  73744 cttgataaaggcgttcaatgtccgacccagtgtgttagctgtgattctaatcatgaagatttagctca 73677  T

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