View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_low_32 (Length: 356)
Name: NF1133_low_32
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 93 - 279
Target Start/End: Original strand, 53613834 - 53614020
Alignment:
| Q |
93 |
gtcattgtctctttcgagtgcattttcatctgatatgaagagtaaaagttcatttgtgttgccagactctagaaaaggtaaatattttcatcaagcattt |
192 |
Q |
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| T |
53613834 |
gtcattgtctctttcgagtgcattttcatctgatattaagagtaaaagttcatttgtgttgccagactctagaaaaggttaatattttcatcaagcattt |
53613933 |
T |
|
| Q |
193 |
aaaaatcaaattataagcactgttttagaccttaaagttgttcannnnnnnnactgacagtctaacatctgctgcagcagcttctat |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53613934 |
aaaaatcaaattataagcactgttttagaccttaaagttgttcattttttttactgacagtctaacatctgctgcagcagcttctat |
53614020 |
T |
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