View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_low_33 (Length: 356)
Name: NF1133_low_33
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 44574802 - 44574686
Alignment:
| Q |
82 |
taccaccagtagtctatttttctaatatttcaaaaataaaagtctgaagttagtaaaagtttgagtttgtagtctagaggaactaattttaagactatca |
181 |
Q |
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| T |
44574802 |
taccaccagtagtctatttttctaatatttcaaaaataaaagtctgaagttagtaaaagtttgagtttgtagtctagaggaactaattttaagactatca |
44574703 |
T |
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| Q |
182 |
taaaaagttgtaaaaat |
198 |
Q |
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| T |
44574702 |
taaaaagttgtaaaaat |
44574686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 227 - 327
Target Start/End: Complemental strand, 44574683 - 44574582
Alignment:
| Q |
227 |
atacggacgaagttccttaatttaatttatgttcttgaaaaattaaccttttt-atcagattcatcgagaactttgggactcacatccttgtgggtctta |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44574683 |
atacggacgaagttccttaatttaatttatgttcttgaaatattaaccttttttatcagattcatcgagaactttgggactcacattcttgtgggtctta |
44574584 |
T |
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| Q |
326 |
gc |
327 |
Q |
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|| |
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| T |
44574583 |
gc |
44574582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 44574970 - 44574904
Alignment:
| Q |
11 |
cagagaatttgattgaacggagtcgtgcaacgttgatagttcaattattaaatcatccttttgttag |
77 |
Q |
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| T |
44574970 |
cagagaatttgattgaacggagtcgtgcaacgttgatagttcaattattaaatcatccttttgttag |
44574904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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