View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_low_34 (Length: 355)
Name: NF1133_low_34
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 134 - 347
Target Start/End: Original strand, 41194062 - 41194275
Alignment:
| Q |
134 |
atacttgtagctctaacaagcatgaacatattagtattcaaagtatcaggtgatatcttacctgtacaaactattatttcttgtgtatcgaggctattca |
233 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41194062 |
atacttgtagctctaacaagcatgaacatgttagtattcaaagtatcaggtgatatcttacctgtacaaactattatttcttgtgtatcgaggctcttca |
41194161 |
T |
|
| Q |
234 |
tttcattttgaaatccatatattttagcactaattttaatttgtactccaacaaataaaacaatatagcagttatggttaaaagaaggtaaataaaaaag |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
41194162 |
tttcattttgaaatccatatattttagcactaattttaatttgtactccaacaaataaaataatatagcagttatggttaaaagaaggtagataaaaaag |
41194261 |
T |
|
| Q |
334 |
aaatgagtattatc |
347 |
Q |
| |
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|||| ||||||||| |
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| T |
41194262 |
aaataagtattatc |
41194275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 41193930 - 41194034
Alignment:
| Q |
28 |
caaaaactagtgctgaattatgaattatagaaagaacggaagaaccttttcacatgaaaacattgttcatgaaagtaagatattggccaatattatgaat |
127 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41193930 |
caaaaactagtgctgaattaggaattatagaaagaacggaagaaccttttcacatgaaaacattgttcatgaaagtaagatattggccaatattatgaat |
41194029 |
T |
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| Q |
128 |
gttaa |
132 |
Q |
| |
|
|||| |
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|
| T |
41194030 |
attaa |
41194034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 134 - 347
Target Start/End: Complemental strand, 23517341 - 23517127
Alignment:
| Q |
134 |
atacttgtagctctaacaagcatgaacatattagtattcaaagtatcaggtgatatcttacctgtacaaactattatttcttgtgtatcgaggctattca |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23517341 |
atacttgtagctctaacaagcatgaacatattagtattcaaagtatcaggtgatattttacctgtacaaactattatttcttgtgtatcgaggctcttca |
23517242 |
T |
|
| Q |
234 |
tttcattttgaaatccatatattttagcactaattttaatttgtactccaacaaataaaacaatatagcagttatggttaaaagaaggtaaat-aaaaaa |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
23517241 |
tttcattttgaaatccatatattttagcactaattttaatttgtactccaacaaataaaacaatatagcagttatggttaaaagaaggtagataaaaaaa |
23517142 |
T |
|
| Q |
333 |
gaaatgagtattatc |
347 |
Q |
| |
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||||| ||||||||| |
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|
| T |
23517141 |
gaaataagtattatc |
23517127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 23517473 - 23517369
Alignment:
| Q |
28 |
caaaaactagtgctgaattatgaattatagaaagaacggaagaaccttttcacatgaaaacattgttcatgaaagtaagatattggccaatattatgaat |
127 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23517473 |
caaaaactagtgctgaattatgaattatagaaagaacggaagaaccttttcacatgaaaacattgttcatgaaagtaagatattggccaatattatgaat |
23517374 |
T |
|
| Q |
128 |
gttaa |
132 |
Q |
| |
|
||||| |
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|
| T |
23517373 |
gttaa |
23517369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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