View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_low_37 (Length: 343)
Name: NF1133_low_37
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 35668167 - 35667841
Alignment:
| Q |
16 |
atctgaaacgaaaactagaagaagcagaagttgatagagaaaatgaagagaatcagggcgaggaggaggaagaagaaggcggagacaaagaaagtatgct |
115 |
Q |
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| T |
35668167 |
atctgaaacgaaaactagaagaagcagaagttgatggagaaaatgaagagaatcagggcgaggaggaggaagaagaaggcggagacaaagaaagtatgct |
35668068 |
T |
|
| Q |
116 |
tcccgttaatcgttcaaagtcaagaagaaaaggaattcctcatcgggcaccnnnnnnn-aaggccct---tcaagggttagagatatttaaataatacac |
211 |
Q |
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|||||||||||||||||| ||||||||||| ||||| ||||| |||||||| |||||||| |||||| ||||||| ||||||||||||||| |
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| T |
35668067 |
tcccgttaatcgttcaaattcaagaagaaagggaatacctcaacgggcacctttcttttaaggccctaaatcaaggattagagagatttaaataatacac |
35667968 |
T |
|
| Q |
212 |
tatcgtctggagatagatttctagctagatctacatttatgctcttgtgagaattaattagttccgaacattttatttcgtcaatatgctttacatttat |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35667967 |
tatcgtctggagatagatttctagctagatctacatttatgctcttgtgagaattaattagttccgaacatttgatttcgtcaatatgctttacatttat |
35667868 |
T |
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| Q |
312 |
gctcttgtgttattagattcattagac |
338 |
Q |
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||||||||||||||||||||||||||| |
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| T |
35667867 |
gctcttgtgttattagattcattagac |
35667841 |
T |
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