View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1133_low_39 (Length: 338)

Name: NF1133_low_39
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1133_low_39
NF1133_low_39
[»] chr2 (6 HSPs)
chr2 (31-201)||(6562662-6562831)
chr2 (206-317)||(6563111-6563222)
chr2 (209-288)||(223892-223973)
chr2 (199-263)||(36903987-36904051)
chr2 (199-263)||(4428804-4428868)
chr2 (199-288)||(9047601-9047692)
[»] chr8 (3 HSPs)
chr8 (199-263)||(7642624-7642688)
chr8 (199-263)||(38573316-38573380)
chr8 (199-263)||(23518224-23518288)
[»] chr4 (10 HSPs)
chr4 (199-263)||(25231534-25231598)
chr4 (199-263)||(31861579-31861643)
chr4 (199-263)||(35808715-35808779)
chr4 (199-262)||(3121083-3121146)
chr4 (209-264)||(9093608-9093663)
chr4 (209-263)||(37624862-37624916)
chr4 (199-252)||(24504700-24504753)
chr4 (199-263)||(16958390-16958454)
chr4 (31-76)||(39331097-39331142)
chr4 (199-263)||(43595003-43595067)
[»] chr3 (5 HSPs)
chr3 (206-263)||(53466257-53466314)
chr3 (199-288)||(8108237-8108327)
chr3 (199-288)||(45249361-45249452)
chr3 (31-76)||(20948291-20948336)
chr3 (31-76)||(30843669-30843714)
[»] chr7 (12 HSPs)
chr7 (209-289)||(48488419-48488501)
chr7 (199-289)||(28646615-28646707)
chr7 (199-263)||(23247756-23247820)
chr7 (199-263)||(28514663-28514727)
chr7 (199-263)||(37869747-37869811)
chr7 (199-264)||(19086330-19086395)
chr7 (199-263)||(10624971-10625035)
chr7 (199-263)||(45618475-45618539)
chr7 (200-263)||(34503153-34503216)
chr7 (40-76)||(5198023-5198059)
chr7 (31-75)||(29197030-29197074)
chr7 (199-263)||(31191397-31191461)
[»] chr6 (1 HSPs)
chr6 (199-288)||(32147870-32147961)
[»] chr1 (4 HSPs)
chr1 (206-263)||(13984272-13984329)
chr1 (31-76)||(36144981-36145026)
chr1 (199-263)||(5892694-5892758)
chr1 (199-263)||(36563876-36563940)
[»] chr5 (3 HSPs)
chr5 (213-263)||(10285009-10285059)
chr5 (199-289)||(34338930-34339022)
chr5 (206-250)||(14663012-14663056)


Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 31 - 201
Target Start/End: Original strand, 6562662 - 6562831
Alignment:
Q  31 atatgtcactaaataagtatattgaaaaactgatatgacaatattattaacgtatcattttaacatcagagtatgttttgactaacttaatacacaatca 130  Q
    ||||| || ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6562662 atatgacattaaataagtatattgaaat-ctgatatgacaatattattaacgtatcattttaacatcagagtatgttttgactaacttaatacacaatca 6562760  T
Q  131 aagttattttaaaatttagatacaatgaagaactattagatcatcttcaatggaaggatcttaaacattta 201  Q
    || |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6562761 aaattattttaaaatttggatacaatgaagaactattagatcatcttcaatggaagggtcttaaacattta 6562831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 206 - 317
Target Start/End: Original strand, 6563111 - 6563222
Alignment:
Q  206 ttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaaagttagttttatatgcttaaacaataagcacattgttaatag 305  Q
    |||||||||||| ||||| |||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||| |||||||||| |     
T  6563111 ttaaaaatataaatcaaacacttattgaaattataaccgcacaatttacaatacaaaaagttacttttatatgcttaaacaataaggacattgttaacat 6563210  T
Q  306 tttcccatgacc 317  Q
    ||| ||||||||    
T  6563211 ttttccatgacc 6563222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 223973 - 223892
Alignment:
Q  209 aaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaaa--gttagttttatatgcttaaacaat 288  Q
    ||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||  | || ||||| |||||||||||||    
T  223973 aaaatataagtcaaacacttattgaagttataaccgtacaattttcaatgcaaaaattgctacttttagatgcttaaacaat 223892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 36903987 - 36904051
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 263  Q
    ||||||||| |||||| |||||||| ||||||| || | ||||||||||||||| ||||||||||    
T  36903987 ttatgtcttgaaaatacaagtcaaacacttattaaagtcataaccgtacaatttccaatgcaaaa 36904051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 4428804 - 4428868
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 263  Q
    ||||||||| || |||||||||||||| ||||| || | ||||||||| ||||| ||||| ||||    
T  4428804 ttatgtcttgaagatataagtcaaatatttattaaagtcataaccgtataattttcaatgtaaaa 4428868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 288
Target Start/End: Complemental strand, 9047692 - 9047601
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa--agttagttttatatgcttaaacaat 288  Q
    |||||| || |||||| |||||||| |||| || || | ||||||||||||||| ||||| ||||   |||| ||||||||| |||||||||    
T  9047692 ttatgttttgaaaatacaagtcaaacacttgttaaagtcataaccgtacaattttcaatgtaaaagttgttacttttatatgattaaacaat 9047601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 7642624 - 7642688
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 263  Q
    |||||| || ||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||    
T  7642624 ttatgttttgaaaatataagtcaaacacttgttgaagttataaccgtacaatttacaatgcaaaa 7642688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 38573316 - 38573380
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 263  Q
    ||||| ||| ||||||||||||||| | || ||||| ||||||||||||||||| ||||||||||    
T  38573316 ttatgccttgaaaatataagtcaaacatttgttgaagttataaccgtacaatttccaatgcaaaa 38573380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 23518224 - 23518288
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 263  Q
    |||| |||||||||||||| ||||||| ||||| || |   ||||||||||||| ||||||||||    
T  23518224 ttatatcttaaaaatataaatcaaatatttattaaagtctgaaccgtacaattttcaatgcaaaa 23518288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 25231598 - 25231534
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 263  Q
    ||||||||| ||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||    
T  25231598 ttatgtcttgaaaatataagtcaaatatttgttgaagttataaccgtacaatttccaatgcaaaa 25231534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 31861643 - 31861579
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 263  Q
    ||||||||| ||||||||||||||| |||| || |||||||||||| ||||||| ||||||||||    
T  31861643 ttatgtcttgaaaatataagtcaaacacttgttaaaattataaccggacaatttccaatgcaaaa 31861579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 35808715 - 35808779
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 263  Q
    |||| |||| ||||||||||||||| |||  ||||| ||||||||||||||||| ||||||||||    
T  35808715 ttatatcttgaaaatataagtcaaacactagttgaagttataaccgtacaattttcaatgcaaaa 35808779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 3121083 - 3121146
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaa 262  Q
    ||||||||| ||||||||||||||  | || ||||| ||||||||||||||||| |||||||||    
T  3121083 ttatgtcttgaaaatataagtcaatcatttgttgaagttataaccgtacaattttcaatgcaaa 3121146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 9093663 - 9093608
Alignment:
Q  209 aaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaaa 264  Q
    ||||||||||||||| |||| || || ||||||||||||||||| |||||||||||    
T  9093663 aaaatataagtcaaacacttgtttaagttataaccgtacaattttcaatgcaaaaa 9093608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 37624862 - 37624916
Alignment:
Q  209 aaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 263  Q
    ||||||||||||||| |||| || || ||||||||||||||||| ||||||||||    
T  37624862 aaaatataagtcaaacacttgttaaagttataaccgtacaattttcaatgcaaaa 37624916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 24504700 - 24504753
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaattt 252  Q
    |||| |||| |||||||| |||||||||||||| || |||||||||||||||||    
T  24504700 ttatatctttaaaatatatgtcaaatacttattaaagttataaccgtacaattt 24504753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 16958454 - 16958390
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 263  Q
    ||||||||| ||||||||||||||| |||| ||||| |||||| ||| |||||| ||||| ||||    
T  16958454 ttatgtcttgaaaatataagtcaaacacttgttgaagttataaacgtgcaatttccaatgtaaaa 16958390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 39331097 - 39331142
Alignment:
Q  31 atatgtcactaaataagtatattgaaaaactgatatgacaatatta 76  Q
    ||||| || |||||||||||||||||| |||||||| |||||||||    
T  39331097 atatgacaataaataagtatattgaaagactgatataacaatatta 39331142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 43595003 - 43595067
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 263  Q
    ||||||||| ||||| ||||| |||  ||| ||||| ||||||||||||||||| |||| |||||    
T  43595003 ttatgtcttgaaaatgtaagttaaacccttcttgaagttataaccgtacaattttcaatacaaaa 43595067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 53466314 - 53466257
Alignment:
Q  206 ttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 263  Q
    |||||||||||||||||| |||||||||| |||||| |||||||||| ||||||||||    
T  53466314 ttaaaaatataagtcaaacacttattgaagttataatcgtacaattttcaatgcaaaa 53466257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 288
Target Start/End: Original strand, 8108237 - 8108327
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa--agttagttttatatgcttaaacaat 288  Q
    ||||| ||| ||||||||||||||  |||| ||||| ||||||||||||||||| ||||||||||   |||| ||||| |||||||||||||    
T  8108237 ttatgccttgaaaatataagtcaac-acttgttgaagttataaccgtacaatttccaatgcaaaagttgttacttttagatgcttaaacaat 8108327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 288
Target Start/End: Complemental strand, 45249452 - 45249361
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa--agttagttttatatgcttaaacaat 288  Q
    ||||||||| |||||| |||||||| | || || || | ||||||||||||||| ||||||||||   | || |||||||||||||||||||    
T  45249452 ttatgtcttgaaaatacaagtcaaacatttgttaaagtcataaccgtacaatttccaatgcaaaagttgctacttttatatgcttaaacaat 45249361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 20948336 - 20948291
Alignment:
Q  31 atatgtcactaaataagtatattgaaaaactgatatgacaatatta 76  Q
    ||||| || ||||||||||||||||| ||||||||||| |||||||    
T  20948336 atatgacaataaataagtatattgaagaactgatatgataatatta 20948291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 30843714 - 30843669
Alignment:
Q  31 atatgtcactaaataagtatattgaaaaactgatatgacaatatta 76  Q
    ||||| || |||||||||||||||||| ||| ||||||||||||||    
T  30843714 atatgacaataaataagtatattgaaagactaatatgacaatatta 30843669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 48488501 - 48488419
Alignment:
Q  209 aaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa--agttagttttatatgcttaaacaata 289  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||| ||||||||||   | || ||||| ||||||||||||||    
T  48488501 aaaatataagtcaaacacttgttgaagttataaccgtacaatttccaatgcaaaagttgctacttttagatgcttaaacaata 48488419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 289
Target Start/End: Complemental strand, 28646707 - 28646615
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa--agttagttttatatgcttaaacaata 289  Q
    ||||||||||||||||||||||||| | || || || | ||||||||||||||| ||||| ||||   | || ||||||||||||||||||||    
T  28646707 ttatgtcttaaaaatataagtcaaaaatttgttaaagtcataaccgtacaatttccaatgtaaaagttgctacttttatatgcttaaacaata 28646615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 23247820 - 23247756
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 263  Q
    ||||| ||| ||||||||||||||| |||| ||||| |||||||||| |||||| ||||||||||    
T  23247820 ttatgccttgaaaatataagtcaaacacttgttgaagttataaccgttcaatttccaatgcaaaa 23247756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 28514663 - 28514727
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 263  Q
    ||||| ||| ||||||||||||||| |||| || || ||||||||||||||||| ||||||||||    
T  28514663 ttatgccttgaaaatataagtcaaacacttgttcaagttataaccgtacaatttccaatgcaaaa 28514727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 37869811 - 37869747
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 263  Q
    |||||| |||||||||||||||||| |||| || || | ||||||||||||||| ||||||||||    
T  37869811 ttatgttttaaaaatataagtcaaacacttgttaaagtcataaccgtacaattttcaatgcaaaa 37869747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 19086330 - 19086395
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaaa 264  Q
    ||||| ||| ||||||||||||||| |||| ||||| |||| |||||||||||| ||| |||||||    
T  19086330 ttatgccttgaaaatataagtcaaacacttgttgaagttattaccgtacaatttccaaagcaaaaa 19086395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 10624971 - 10625035
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 263  Q
    ||||||||| |||||| |||||||| |||||||  | | ||||||||||||||| ||||||||||    
T  10624971 ttatgtcttgaaaatacaagtcaaacacttattatagtcataaccgtacaattttcaatgcaaaa 10625035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 45618539 - 45618475
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 263  Q
    ||||||||| ||||||||||||||||| ||||| || | | ||| ||||||||| ||||||||||    
T  45618539 ttatgtcttgaaaatataagtcaaatatttattaaagtcacaacggtacaattttcaatgcaaaa 45618475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 34503153 - 34503216
Alignment:
Q  200 tatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 263  Q
    |||||||| ||||||||| ||||| |||| ||||||||||||  ||||||||| |||| |||||    
T  34503153 tatgtcttgaaaatataaatcaaacacttgttgaaattataatagtacaattttcaattcaaaa 34503216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 5198023 - 5198059
Alignment:
Q  40 taaataagtatattgaaaaactgatatgacaatatta 76  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  5198023 taaataagtatattgaaagactaatatgacaatatta 5198059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 29197074 - 29197030
Alignment:
Q  31 atatgtcactaaataagtatattgaaaaactgatatgacaatatt 75  Q
    ||||| || ||| |||||||||||||| |||||||||||||||||    
T  29197074 atatgacaataagtaagtatattgaaagactgatatgacaatatt 29197030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 31191397 - 31191461
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 263  Q
    ||||| ||| ||||||||||||||| |||| || || |||||||||| |||||| ||||| ||||    
T  31191397 ttatgccttgaaaatataagtcaaacacttgttaaagttataaccgtgcaatttccaatgtaaaa 31191461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 288
Target Start/End: Complemental strand, 32147961 - 32147870
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaaagt--tagttttatatgcttaaacaat 288  Q
    |||||| || |||||| || ||||||| ||||| || | ||||||||||||||| ||||||||||| |  || |||||||||||||||||||    
T  32147961 ttatgttttgaaaatacaaatcaaatatttattaaagtcataaccgtacaatttgcaatgcaaaaattactacttttatatgcttaaacaat 32147870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 13984329 - 13984272
Alignment:
Q  206 ttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 263  Q
    |||||||||||||||||| | |||||||| |||||||||||| |||| ||||| ||||    
T  13984329 ttaaaaatataagtcaaacatttattgaagttataaccgtacgatttccaatgtaaaa 13984272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 36144981 - 36145026
Alignment:
Q  31 atatgtcactaaataagtatattgaaaaactgatatgacaatatta 76  Q
    ||||| || ||| |||||||||||||||||| ||||||||||||||    
T  36144981 atatgacaataactaagtatattgaaaaactaatatgacaatatta 36145026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 5892758 - 5892694
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 263  Q
    |||| ||||||||||| |||||||| ||||||| || | ||||||||| ||||| |||| |||||    
T  5892758 ttatatcttaaaaatacaagtcaaacacttattaaagtcataaccgtataatttccaatccaaaa 5892694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 36563876 - 36563940
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 263  Q
    ||||| ||| ||||||||||||||| |||| || || ||||| ||||||||||| ||||| ||||    
T  36563876 ttatgccttgaaaatataagtcaaacacttgttaaagttatatccgtacaattttcaatgtaaaa 36563940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 10285059 - 10285009
Alignment:
Q  213 tataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa 263  Q
    ||||||||||||| || ||||| ||||||||||||||||| |||| |||||    
T  10285059 tataagtcaaatatttgttgaagttataaccgtacaatttccaatacaaaa 10285009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 289
Target Start/End: Original strand, 34338930 - 34339022
Alignment:
Q  199 ttatgtcttaaaaatataagtcaaatacttattgaaattataaccgtacaatttacaatgcaaaa--agttagttttatatgcttaaacaata 289  Q
    ||||| ||| ||||||||||||||| |||| ||||| ||||||||  ||| ||| ||||||||||   | || ||||| ||||||||||||||    
T  34338930 ttatgccttgaaaatataagtcaaacacttgttgaagttataaccacacactttccaatgcaaaagttgctatttttagatgcttaaacaata 34339022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 14663012 - 14663056
Alignment:
Q  206 ttaaaaatataagtcaaatacttattgaaattataaccgtacaat 250  Q
    |||||||||||||||||| |||| ||||| ||||||||| |||||    
T  14663012 ttaaaaatataagtcaaacacttgttgaagttataaccgcacaat 14663056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University