View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1133_low_4 (Length: 541)

Name: NF1133_low_4
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1133_low_4
NF1133_low_4
[»] chr5 (3 HSPs)
chr5 (269-533)||(14004496-14004760)
chr5 (29-239)||(14004244-14004451)
chr5 (116-185)||(16230784-16230853)
[»] chr2 (3 HSPs)
chr2 (115-183)||(33657401-33657469)
chr2 (118-185)||(10231872-10231939)
chr2 (122-155)||(2377913-2377946)
[»] chr6 (1 HSPs)
chr6 (119-176)||(33817334-33817391)
[»] chr1 (4 HSPs)
chr1 (122-188)||(45112052-45112118)
chr1 (121-178)||(15867618-15867675)
chr1 (116-148)||(15920248-15920280)
chr1 (157-185)||(46189367-46189395)
[»] chr8 (1 HSPs)
chr8 (149-185)||(18103089-18103125)
[»] chr4 (2 HSPs)
chr4 (120-173)||(35656474-35656527)
chr4 (122-175)||(45677534-45677587)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 269 - 533
Target Start/End: Original strand, 14004496 - 14004760
Alignment:
Q  269 aagaatacacgagtgttgttatatgcaaattctgaacaagtctaaccaatggaagtaagaattttccaatggtaatatatttcgagcaaaagacaaattg 368  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||| | ||    
T  14004496 aagaatacactagtgttgttatatgcaaattctgaacaagtctaaccaatggaagtaagaatttttcaatagtaacatatttcgagcaaaagacataatg 14004595  T
Q  369 atgaagccaaaacaaaaggaaggtgacatccaagacatcctttaatgacgaataattgttctgaatcaaatggttataacttgagaagtttagaatgtga 468  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  14004596 atgaagccaaaataaaaggaaggtgacatccaagacatccttcaatgacgaataattgttctaaatcaaatggttataatttgagaagtttagaatgtga 14004695  T
Q  469 tcattattgtttttgggttcaacaaaatgagttaaaatcttacctataggtttaagacctatgat 533  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004696 tcgttattgtttttgggttcaacaaaatgagttaaaatcttacctataggtttaagacctatgat 14004760  T

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Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 29 - 239
Target Start/End: Original strand, 14004244 - 14004451
Alignment:
Q  29 attggtgtcatgagcacggggtggaggggtggctgaagttatgggtgttgcagaaggagagtagttgaaagagtaaatatgttttacacactgtcaatca 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||| |||||||||||||    
T  14004244 attggtgtcatgagcacggggtggaggggtggctgaagttatgggtgttgcagaaggagagt---tgaaagagtaaatatgttttatacactgtcaatca 14004340  T
Q  129 atcataatcgtgagatcatttaaaatagttgactttaatcataactatttttaaaattattaaattaattggttgtaatttaatgatattgtaaagcttt 228  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  14004341 atcataatcgtgagatcatttaaaataattgactttaatcataactatttttaaaattattaaattaattggttgtaatttaatgatattgtaaagtttt 14004440  T
Q  229 ttaaactagtg 239  Q
    |||||||||||    
T  14004441 ttaaactagtg 14004451  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 16230853 - 16230784
Alignment:
Q  116 acactgtcaatcaatcataatcgtgagatcatttaaaatagttgactttaatcataactatttttaaaat 185  Q
    |||||||||||| ||| ||||||   |||||||||||||  ||||||||||||||||||| || ||||||    
T  16230853 acactgtcaatcgatcgtaatcgactgatcatttaaaatgtttgactttaatcataactacttctaaaat 16230784  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 33657401 - 33657469
Alignment:
Q  115 cacactgtcaatcaatcataatcgtgagatcatttaaaatagttgactttaatcataactatttttaaa 183  Q
    |||||| |||||||||||||| ||| | |||||| |||||| |||||||||| ||||||||||||||||    
T  33657401 cacactatcaatcaatcataaccgtcaaatcattgaaaatatttgactttaaccataactatttttaaa 33657469  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 10231939 - 10231872
Alignment:
Q  118 actgtcaatcaatcataatcgtgagatcatttaaaatagttgactttaatcataactatttttaaaat 185  Q
    ||||||||||||||| |||| | |||||||| |||  | |||||||| ||||||||||||| ||||||    
T  10231939 actgtcaatcaatcacaatcatcagatcattaaaatcatttgacttttatcataactatttctaaaat 10231872  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 2377946 - 2377913
Alignment:
Q  122 tcaatcaatcataatcgtgagatcatttaaaata 155  Q
    ||||||||||||||||||||||||||| ||||||    
T  2377946 tcaatcaatcataatcgtgagatcattaaaaata 2377913  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 33817391 - 33817334
Alignment:
Q  119 ctgtcaatcaatcataatcgtgagatcatttaaaatagttgactttaatcataactat 176  Q
    ||||||||||||||||||||| |||||||| ||||||  |||||||||||||| ||||    
T  33817391 ctgtcaatcaatcataatcgttagatcattaaaaatacatgactttaatcatatctat 33817334  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 45112052 - 45112118
Alignment:
Q  122 tcaatcaatcataatcgtgagatcatttaaaatagttgactttaatcataactatttttaaaattat 188  Q
    ||||| |||||||||| ||||||  ||||||||  ||||||||||| ||||||||||||||| ||||    
T  45112052 tcaataaatcataatcatgagattgtttaaaatgtttgactttaattataactatttttaaagttat 45112118  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 15867675 - 15867618
Alignment:
Q  121 gtcaatcaatcataatcgtgagatcatttaaaatagttgactttaatcataactattt 178  Q
    ||||||||||||||||||| | |||||| ||| |  ||||||||||||||||||||||    
T  15867675 gtcaatcaatcataatcgtcatatcattaaaactgtttgactttaatcataactattt 15867618  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 15920280 - 15920248
Alignment:
Q  116 acactgtcaatcaatcataatcgtgagatcatt 148  Q
    |||| ||||||||||||||||||||||||||||    
T  15920280 acaccgtcaatcaatcataatcgtgagatcatt 15920248  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 185
Target Start/End: Complemental strand, 46189395 - 46189367
Alignment:
Q  157 ttgactttaatcataactatttttaaaat 185  Q
    |||||||||||||||||||||||||||||    
T  46189395 ttgactttaatcataactatttttaaaat 46189367  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 18103089 - 18103125
Alignment:
Q  149 taaaatagttgactttaatcataactatttttaaaat 185  Q
    |||||||||||||||||| ||||||||||||||||||    
T  18103089 taaaatagttgactttaaccataactatttttaaaat 18103125  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 35656527 - 35656474
Alignment:
Q  120 tgtcaatcaatcataatcgtgagatcatttaaaatagttgactttaatcataac 173  Q
    |||| ||||||||||||||| | |||||| |||||| ||||| |||||||||||    
T  35656527 tgtcgatcaatcataatcgtcacatcattaaaaatatttgacattaatcataac 35656474  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 45677587 - 45677534
Alignment:
Q  122 tcaatcaatcataatcgtgagatcatttaaaatagttgactttaatcataacta 175  Q
    ||||||||||||||  |||| |||||| |||||| ||||||||| |||||||||    
T  45677587 tcaatcaatcataactgtgaaatcattaaaaatatttgactttattcataacta 45677534  T

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