View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1133_low_40 (Length: 332)

Name: NF1133_low_40
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1133_low_40
NF1133_low_40
[»] chr1 (1 HSPs)
chr1 (30-322)||(19703034-19703319)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 30 - 322
Target Start/End: Complemental strand, 19703319 - 19703034
Alignment:
Q  30 gaatatatgaggttaccagcaagtcaatattcagtgttagacgctgaaaggattgaacgtgtgagtgaggatacattcaggtgttatgtttacacaatta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19703319 gaatatatgaggttaccagcaagtcaatattcagtgttagacgctgaaaggattgaacgtgtgagtgaggatacattcaggtgttatgtttacacaatta 19703220  T
Q  130 agtttttcacatttgaggtttgtcctgttttgcttgtcaaagttgaacaacaacccaatggctgttgcattaagctcttgtcctgcaaggtagatactta 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  19703219 agtttttcacatttgaggtttgtcctgttttgcttgtcaaagttgaacaacaacccaatggctgttgcattaagctcttgtcctgcaaggtagatactt- 19703121  T
Q  230 tcagttatcaatcattcattaacatccatgtttgcctttttagtctttcttatttcttgttttcttacattacagcttcagggttcccctatg 322  Q
          ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19703120 ------atcaatcattcattaacatccatgttttcctttttagtctttcttatttcttgttttcttacattacagcttcagggttcccctatg 19703034  T

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