View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_low_42 (Length: 320)
Name: NF1133_low_42
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 17921791 - 17922072
Alignment:
| Q |
11 |
agaatatctggagtaattcattatagaagaacaatccagggcattgtcgtctctgaggatt-gtgtgaaaaaaggaatgattgtcgtatttagttgcaaa |
109 |
Q |
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| T |
17921791 |
agaatatctggagtaattcattataaaagaacaatccagggcattgtcgtctctgaggatttgtgtgaaaaaaggaatcattgtagtatttagttgcaaa |
17921890 |
T |
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| Q |
110 |
tatgcacattgttgacaaattgaaaagcaagaagttaaagaatatttgcactcactttatcaggcagaattgactcccaaatctcattgcatttattaat |
209 |
Q |
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| T |
17921891 |
tatgcacattgttgacacattgaaaagcaagaagttaaagaatatttgcactcacttgatcaggcagaattgactcccaaatctcattgcatttattaat |
17921990 |
T |
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| Q |
210 |
agcttgcgcaaccaaactattatcatccatatgcattaggcaagcatgcaataatgaactggaaaagaacatctgatccatt |
291 |
Q |
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| T |
17921991 |
agcttgagcaaccaaactattatcatccgtatgcattaggcaagcatgcaataatgaagtggaaaagaacatctgatccatt |
17922072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 131 - 291
Target Start/End: Original strand, 32355772 - 32355932
Alignment:
| Q |
131 |
gaaaagcaagaagttaaagaatatttgcactcactttatcaggcagaattgactcccaaatctcattgcatttattaatagcttgcgcaaccaaactatt |
230 |
Q |
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| T |
32355772 |
gaaaagcaagaaactaaagaacattggcactcactttatctggctgaattgactcccaaatctcattgcatttattaacagcttgctcaaccaaattatc |
32355871 |
T |
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| Q |
231 |
atcatccatatgcattaggcaagcatgcaataatgaactggaaaagaacatctgatccatt |
291 |
Q |
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| T |
32355872 |
atcatcccattgcatgaggtgggcatgcaataatgaagtggcaaagaacatctggtccatt |
32355932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 32355608 - 32355673
Alignment:
| Q |
11 |
agaatatctggagtaattcattatagaagaacaatccagggcattgtcgtctctgaggattgtgtg |
76 |
Q |
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||||||| || |||||||||||||| |||| ||| ||||||||||| |||||||||||||||||| |
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| T |
32355608 |
agaatatgtgcagtaattcattataaaagagcaagccagggcattgctgtctctgaggattgtgtg |
32355673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 42302497 - 42302549
Alignment:
| Q |
24 |
taattcattatagaagaacaatccagggcattgtcgtctctgaggattgtgtg |
76 |
Q |
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| T |
42302497 |
taattcattataaaagataaagccaaggcattgtcctctctgaggattgtgtg |
42302549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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