View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1133_low_43 (Length: 317)
Name: NF1133_low_43
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_43 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 37 - 280
Target Start/End: Original strand, 7737139 - 7737381
Alignment:
| Q |
37 |
tagtaaaatataaccattattcaagtggtaacttgttcgtacaatattccttgcttaaaaattacaacaaaaattgaaaaaggttcaaggaacttgagtt |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7737139 |
tagtaaaatataaccattattcaagtggtaacttgttcgtacaatattccttgcttaataattacaacaaaaattgaaaa-ggttcaaggaacttgagtt |
7737237 |
T |
|
| Q |
137 |
attaattaatgcataattcaaccttgttccccaaccattcctgcctaagaaaatgtgtgtcctacaacgattaactgaaacacaccttcatttctttgtt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7737238 |
attaattaatgcataattcaaccttgttccccaaccattcctgcctaagaaaatgtgtgtcctacaacgattaactgaaacacaccttcatttctttgtt |
7737337 |
T |
|
| Q |
237 |
tttgtgtgcttgtttgtcattaatttctagacacaaactatatt |
280 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7737338 |
tctgtgtgcttgtttgtcattaatttatagacacaaactatatt |
7737381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University