View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1133_low_44 (Length: 313)

Name: NF1133_low_44
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1133_low_44
NF1133_low_44
[»] chr8 (2 HSPs)
chr8 (88-313)||(24882145-24882370)
chr8 (90-313)||(25303222-25303444)
[»] scaffold0955 (1 HSPs)
scaffold0955 (90-299)||(1441-1649)


Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 88 - 313
Target Start/End: Complemental strand, 24882370 - 24882145
Alignment:
Q  88 ttgtaagaaatcaattcctttaattatcattgcttcgtcagtggcgtccagtagtccgaatttagttccactcacaaatttgtctccggacaattctttt 187  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24882370 ttgtaagaaatgaattccttcaattatcattgcttcgtcagtggcgtccagtagtccgaatttagttccactcacaaatttgtctccggacaattctttt 24882271  T
Q  188 caaccctcagatgacgtcactgatctcagttactcccaaggctctggcaaccatggtcgtggtggccgtaatggtggaggaggtggtcgtagtacattgg 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24882270 caaccctcagatgacgtcactgatctcagttactcccaaggctctggcaaacatggtcgtggtggccgtaatggtggaggaggtggtcgtagtaccttgg 24882171  T
Q  288 agtgtcaagtgttccatacatatggc 313  Q
    ||||||||||||||||||||||||||    
T  24882170 agtgtcaagtgttccatacatatggc 24882145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 90 - 313
Target Start/End: Original strand, 25303222 - 25303444
Alignment:
Q  90 gtaagaaatcaattcctttaattatcattgcttcgtcagtggcgtccagtagtccgaatttagttccactcacaaatttgtctccggacaattcttttca 189  Q
    |||||||||||| ||||| ||||||  |||||| ||||||||||||||||||||||| ||  ||||||||||||||||||| ||| |||||||||| |||    
T  25303222 gtaagaaatcaactccttcaattattgttgctttgtcagtggcgtccagtagtccgatttctgttccactcacaaatttgtttccagacaattcttctca 25303321  T
Q  190 accctcagatgacgtcactgatctcagttactcccaaggctctggcaaccatggtcgtggtggccgtaatggtggaggaggtggtcgtagtacattggag 289  Q
    | ||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||     
T  25303322 agcctcagatgacgtaactgatctcaattactcccaagggtctggcaaccatggtcgtggtggccgtaatggtcgaggaggtggttgtagtaccttgga- 25303420  T
Q  290 tgtcaagtgttccatacatatggc 313  Q
    |||||||||| |||||| ||||||    
T  25303421 tgtcaagtgtgccatacgtatggc 25303444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0955 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: scaffold0955
Description:

Target: scaffold0955; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 90 - 299
Target Start/End: Original strand, 1441 - 1649
Alignment:
Q  90 gtaagaaatcaattcctttaattatcattgcttcgtcagtggcgtccagtagtccgaatttagttccactcacaaatttgtctccggacaattcttttca 189  Q
    |||||||||||| ||||| ||||||  ||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||| || |||||||  ||    
T  1441 gtaagaaatcaactccttcaattattgttgcttcgtcagtggcgtcaagtagtccgaattctgttccactcacaaatttgtctccagaaaattcttcaca 1540  T
Q  190 accctcagatgacgtcactgatctcagttactcccaaggctctggcaaccatggtcgtggtggccgtaatggtggaggaggtggtcgtagtacattggag 289  Q
    | |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||     
T  1541 agcctcagatgacgtcactgatctcaattactcccaagggtctggcaaccatggtcgtggtgtccgtaatggtcgaggaggtggtcgtagtaccttgga- 1639  T
Q  290 tgtcaagtgt 299  Q
    ||||||||||    
T  1640 tgtcaagtgt 1649  T

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