View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_low_45 (Length: 312)
Name: NF1133_low_45
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 80 - 283
Target Start/End: Complemental strand, 10297065 - 10296862
Alignment:
| Q |
80 |
tttttcattgtggatctgatctcctggtgcactcgccatcgtttaatttctgagtctctctctgtttatgcattcttgagtttgtgttgctgttgttgat |
179 |
Q |
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| T |
10297065 |
tttttcactgtggatctgatctcctggtgcactcttcatcgtttaatttctgagtctctctctgtttatgcattcttgagtttgtgttgttgttgttgat |
10296966 |
T |
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| Q |
180 |
gaagagtgtaaataattaatagtggaggtcaccggaataaagagatatggaacggaggagcaaggtcaaggtgaaagaaacggtggagatatgagtgaat |
279 |
Q |
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| T |
10296965 |
gaagagtgtaaataattaatagtggaggtcaccggaataaagagatctggaacggaggagcaaggtcaaggtgaaagaaacggtggagatatgagtgaat |
10296866 |
T |
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| Q |
280 |
ggag |
283 |
Q |
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|||| |
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| T |
10296865 |
ggag |
10296862 |
T |
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Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 2586934 - 2586857
Alignment:
| Q |
206 |
ggtcaccggaataaagagatatggaacggaggagcaaggtcaaggtgaaagaaacggtggagatatgagtgaatggag |
283 |
Q |
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| T |
2586934 |
ggtcaccggaataaagagatctggaacggaggagcaaggtcaaggtgaaagaaacggtggagataagaggtaatggag |
2586857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 89 - 279
Target Start/End: Complemental strand, 22217800 - 22217610
Alignment:
| Q |
89 |
gtggatctgatctcctggtgcactcgccatcgtttaatttctgagtctctctctgtttatgcattcttgagtttgtgttgctgttgttgatgaagagtgt |
188 |
Q |
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| T |
22217800 |
gtggatctgatctcctagtgcattcgtcatcgtttaatttccgagttactctctgtttatgtattcttgaatttgtgttgttgttgttgatgacgagtgt |
22217701 |
T |
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| Q |
189 |
aaataattaatagtggaggtcaccggaataaagagatatggaacggaggagcaaggtcaaggtgaaagaaacggtggagatatgagtgaat |
279 |
Q |
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| T |
22217700 |
aaataattaatagtggaggtcaccagaataaagagatctggaacgaaggagcaaggtcaaggtgaaagaaacggtggagatctgagtgaat |
22217610 |
T |
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