View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_low_52 (Length: 276)
Name: NF1133_low_52
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 49679269 - 49679031
Alignment:
| Q |
9 |
caagaatatcaagtgaccactgacaattcctcaacaaaaaacttccagtattcaaaccaatccaattcttctcgtcataaatcatctcattccaaccatg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49679269 |
caagaatatcaagtgaccactgacaattcctcaacaaaaaacttccagtattcaaaccaatccaattcttctcatcataaatcatctcattccaaccatg |
49679170 |
T |
|
| Q |
109 |
catcacaaaattatgatccttataacgctcccacggaacctcgaaagccatatcagtaaacatagcatcactatccatccaccacaaaaactcaacttca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49679169 |
catcacaaaattatgatccttataacgctcccacggaacctcaaaagccatatcagtaaacatagcatcactatccatccaccacaaaaactcaacttca |
49679070 |
T |
|
| Q |
209 |
ggatgtgacaacaatagcttcctgatcaaaggaagttta |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
49679069 |
ggatgtgacaacaatagcttcctgatcaaaggaagttta |
49679031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 45168654 - 45168576
Alignment:
| Q |
143 |
ggaacctcgaaagccatatcagtaaacatagcatcactatccatccaccacaaaaactcaacttcaggatgtgacaaca |
221 |
Q |
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|||| ||| ||| ||||||| ||||| | ||||||||||||||||||||| | | ||||||||||| |||||||||| |
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| T |
45168654 |
ggaagctcaaaaaccatatctgtaaaaaaagcatcactatccatccaccaaatccattcaacttcagggtgtgacaaca |
45168576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 20181235 - 20181463
Alignment:
| Q |
9 |
caagaatatcaagtgaccactgacaattcctcaacaaaaaacttccagtattcaaaccaatccaattcttctcgtcataaatcatctcattccaaccatg |
108 |
Q |
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|||||||||| | |||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| || ||||| | |||||| ||||||||||| |
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| T |
20181235 |
caagaatatccaatgaccactgacagttcctcaacaaaaaactcccagtattcaacccaatccaattcttttcatcatacaccatctcgttccaaccatg |
20181334 |
T |
|
| Q |
109 |
catcacaaaattatga-tccttataacgctcccacggaacctcgaaagccatatcagtaaacatagcatcactatccatccaccacaaaaactcaacttc |
207 |
Q |
| |
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|||||| ||||| ||| || ||||| | ||||||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20181335 |
catcaccaaatt-tgagtctttatacctctcccacggcacttcaaaagccatatccgtaaacatagcatcactatccatccaccacaaaaactccacttc |
20181433 |
T |
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| Q |
208 |
aggatgtgacaacaatagcttcctgatcaa |
237 |
Q |
| |
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|| |||| ||| | |||||||| ||||| |
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|
| T |
20181434 |
tgggtgtgccaaaagaagcttcctaatcaa |
20181463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 44268583 - 44268811
Alignment:
| Q |
9 |
caagaatatcaagtgaccactgacaattcctcaacaaaaaacttccagtattcaaaccaatccaattcttctcgtcataaatcatctcattccaaccatg |
108 |
Q |
| |
|
|||||||||| | |||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| || ||||| | |||||| ||||||||||| |
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| T |
44268583 |
caagaatatccaatgaccactgacagttcctcaacaaaaaactcccagtattcaacccaatccaattcttttcatcatacaccatctcgttccaaccatg |
44268682 |
T |
|
| Q |
109 |
catcacaaaattatga-tccttataacgctcccacggaacctcgaaagccatatcagtaaacatagcatcactatccatccaccacaaaaactcaacttc |
207 |
Q |
| |
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|||||| ||||| ||| || ||||| | ||||||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44268683 |
catcaccaaatt-tgagtctttatacctctcccacggcacttcaaaagccatatccgtaaacatagcatcactatccatccaccacaaaaactccacttc |
44268781 |
T |
|
| Q |
208 |
aggatgtgacaacaatagcttcctgatcaa |
237 |
Q |
| |
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|| |||| ||| | |||||||| ||||| |
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|
| T |
44268782 |
tgggtgtgccaaaagaagcttcctaatcaa |
44268811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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