View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_low_56 (Length: 270)
Name: NF1133_low_56
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 4 - 249
Target Start/End: Original strand, 40322353 - 40322594
Alignment:
| Q |
4 |
tcctcactacagttgaaagagatagtttaccggtcaaaattgaattcaattaaaacccattaatggtttccataactccattaatggtttctataatttc |
103 |
Q |
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| T |
40322353 |
tcctcactacagttgaaagagatagtttacctgtcaaaattgaattcaattaaaacccat----ggtttccataactccattaatggtttctataatttc |
40322448 |
T |
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| Q |
104 |
atttgatttagataacaaacgaactgggggatcaaattgaaaaaccatgatcaatacttttctgatttttcaagcgaaaagataaattgaaacaaaacta |
203 |
Q |
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|||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40322449 |
atttgattgagataacaaacgaactaggggatcaaattgaaaaaccatgattaatacttttctgatttttcaagcgaaaagataaattgaaacaaaactt |
40322548 |
T |
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| Q |
204 |
gtagcaccatannnnnnngttatggggtattaagtattaactagca |
249 |
Q |
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| T |
40322549 |
gtagcaccatatttttttgttatggggtattaagtattaactagca |
40322594 |
T |
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