View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1133_low_59 (Length: 267)
Name: NF1133_low_59
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_59 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 46 - 235
Target Start/End: Original strand, 14123456 - 14123655
Alignment:
| Q |
46 |
ctttgttggagttataggtaacacatgcatatgatgaatacccttctattca----------ctcttttgcactaaccttaatggttccaatctttattg |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14123456 |
ctttgttggagttataggtaacacatgcatatgatgaatacccttctattcattccttttcactcttttgcactaaccttaatggttccaatctttattg |
14123555 |
T |
|
| Q |
136 |
atccatgcccaaaaatggaaatttcatatatgacttttttcttaatttgtttctacaggtaacatcatctcaattctcatgtttctttctcctgtgtaag |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14123556 |
atccatgcccaaaaatggaaatttcatatatgacttttttcttaatttgtttctacaggtaacatcatctcaattctcatgtttctttctcctgtgtaag |
14123655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University