View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_low_66 (Length: 253)
Name: NF1133_low_66
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_66 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0955 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 24881914 - 24882151
Alignment:
| Q |
16 |
ataattgctctaagaagttcaagaatatgagtatctggacttcttattcactggttttccatgttatcatatgtacatagtgtaatataggcatgcagcc |
115 |
Q |
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| T |
24881914 |
ataattgctctaagaagttcaagaatatgagtatctggacttcttattcactggttttccatgttatcatatgtacatagtgtaatataggcatgcagcc |
24882013 |
T |
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| Q |
116 |
ctcaagttcaacctggtgagaaatgcaatataggcatggaggattgttgagcccaaagtggagtcagttgacttgattgtggtaaagcatcaggggttgt |
215 |
Q |
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| T |
24882014 |
ctcaagttcaacctggtgagaaatgcaatataggcatggaggattgttgagcccaaagtggagtcagttgacttgactgtggtaaagcatcaggggttgt |
24882113 |
T |
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| Q |
216 |
tgagcctatggtagcaggttgatgcatcatggccatat |
253 |
Q |
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| T |
24882114 |
tgagcctatggtagcaggttgatgcatcatggccatat |
24882151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 25303585 - 25303511
Alignment:
| Q |
141 |
caatataggcatggaggattgttgagcccaaagtggagtcagttgacttgattgtggtaaagcatcaggggttgt |
215 |
Q |
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| T |
25303585 |
caataaaggcatgtaggattgttgagcccaaagtggagtcagttgacacgattgtggtaaagcatcagggtttgt |
25303511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 143
Target Start/End: Complemental strand, 25303638 - 25303605
Alignment:
| Q |
110 |
gcagccctcaagttcaacctggtgagaaatgcaa |
143 |
Q |
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| T |
25303638 |
gcagccctcaagttcaccctggtgagaaatgcaa |
25303605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0955 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0955
Description:
Target: scaffold0955; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 1795 - 1721
Alignment:
| Q |
141 |
caatataggcatggaggattgttgagcccaaagtggagtcagttgacttgattgtggtaaagcatcaggggttgt |
215 |
Q |
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| T |
1795 |
caatagaggcatggaggattgttgagcccaaagtggagtcagttgacttgattgtggtaaagcatcaagggttgt |
1721 |
T |
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