View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_low_69 (Length: 251)
Name: NF1133_low_69
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_69 |
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Alignment Details
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 129 - 234
Target Start/End: Original strand, 49247876 - 49247981
Alignment:
| Q |
129 |
ccaaagaagcggttgaggaagagattgtggccaaagaagaagaaaccaatgtgacaaaagtttcaacctctgaaggtgatgaacaaaatgatgtcaaatc |
228 |
Q |
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| T |
49247876 |
ccaaagaagcggttcaggaagagattgtggccaaagaagaagaaaccaatgtgacaaaagtttcaacctctgaaggtgatgaacaaaatgatatcaaatc |
49247975 |
T |
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| Q |
229 |
tgagca |
234 |
Q |
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|||||| |
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| T |
49247976 |
tgagca |
49247981 |
T |
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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 49247748 - 49247782
Alignment:
| Q |
1 |
aacgactcaggaagaagaaaccaaagtaatggctc |
35 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
49247748 |
aacgactcaggaagaagaaaccaaagtaatggctc |
49247782 |
T |
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