View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_low_7 (Length: 520)
Name: NF1133_low_7
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_7 |
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| [»] scaffold0370 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 5e-94; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 199 - 491
Target Start/End: Original strand, 38633357 - 38633649
Alignment:
| Q |
199 |
gatgaaactcgtatatttattttgttctggttttcaaattatttttgtgcagtctatgaattctttgatgctgcatagttgcaaaaatttggctgaggaa |
298 |
Q |
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| T |
38633357 |
gatgaaactcatatatttatattgttctggttttcaaattatttttgtgtagtctatgaattctgtgatgctacatagttgcaaaaatttggccgaggaa |
38633456 |
T |
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| Q |
299 |
aaacaaattctgagggctataaacattcaacagaaagatgttgcttcgttcaaatcactagaagttctnnnnnnnncggtaatttaatagatttgnnnnn |
398 |
Q |
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| T |
38633457 |
aaaaatattctgagggatataaacattcaacagaaaggtgttgcttcattcaaatcgctaaaagttctgaaaaaaacggtaatttaatagattcgttttt |
38633556 |
T |
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| Q |
399 |
nnnnnctttctctcattatgaagattggagtttctgtgtttggtattacttatattgcttttgttggaatgttgaaaacttggaacagattag |
491 |
Q |
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| T |
38633557 |
tttttttttctttcattatgaagattggagtttctgtgtttggtattacttatattgcttttgttggaatgttgaaaacttggaacagattag |
38633649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 7 - 208
Target Start/End: Original strand, 38633134 - 38633335
Alignment:
| Q |
7 |
tagattatactatcttcaaaaggatcggagaaaccgcgtggcgagtaaagagaagatacttatggatttatatatggctcttgatgaattgaatttcatg |
106 |
Q |
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| T |
38633134 |
tagattacactatctacaaaaggaacggagaaaccgcgtggcgagtaaggagaagatacttagggatttatatatggctcttgatgagttgaatttcatg |
38633233 |
T |
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| Q |
107 |
aacaaagcatcaaagggaggacggtttggggaaaagcctgataaaaatgttagaaaaatacaggtattttctatttaatagcatgttataatgatgaaac |
206 |
Q |
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| T |
38633234 |
aacaaagcatcaaagggaggacggtttggggaaaagcctgataaaaatgttagaaaaatatagctattttctatttaatagcatgttataacgatgaaac |
38633333 |
T |
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| Q |
207 |
tc |
208 |
Q |
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| T |
38633334 |
tc |
38633335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 70 - 356
Target Start/End: Original strand, 38637182 - 38637461
Alignment:
| Q |
70 |
ggatttatatatggctcttgatgaattgaatttcatgaacaaagcatcaaagggaggacggtttggggaaaagcctgataaaaatgttagaaaaatacag |
169 |
Q |
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| T |
38637182 |
ggatttgtatatgactcttgatcaattgaatttcataaacaaagtagcaaatggagaatggttcggggaaaagcttgataaaaatgtaagaaaaataaag |
38637281 |
T |
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| Q |
170 |
gtattttctatttaatagca-tgttataatgatgaaactcgtata-tttattttgttctggttttcaaattatttttgtgcagtctatgaattctttgat |
267 |
Q |
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| T |
38637282 |
-------ctatttaatagaatttttaatatgatgaaattaatatattttgtgttgttttgattttgaaatcgtctatgt--agtctttgaattattttaa |
38637372 |
T |
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| Q |
268 |
gctgcatagttgcaaaaatttggctgaggaaaaacaaattctgagggctataaacattcaacagaaagatgttgcttcgttcaaatcac |
356 |
Q |
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| T |
38637373 |
gctacataggagcaaaagtttggccgaagagaaacaaattctgagggatataaagattctgcagaaagatgttgcttcattcaaatcac |
38637461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 242 - 336
Target Start/End: Original strand, 38690013 - 38690107
Alignment:
| Q |
242 |
tttgtgcagtctatgaattctttgatgctgcatagttgcaaaaatttggctgaggaaaaacaaattctgagggctataaacattcaacagaaaga |
336 |
Q |
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| T |
38690013 |
tttgtgtagtctttgagttatttgaagctacatggaagcaaaagtttggctgaggagaaacaaattctgagggatataaaaattcaacagaaaga |
38690107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 363
Target Start/End: Original strand, 38690119 - 38690152
Alignment:
| Q |
330 |
agaaagatgttgcttcgttcaaatcactagaagt |
363 |
Q |
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| T |
38690119 |
agaaagatgttgcttcattcaaatcactagaagt |
38690152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 286 - 351
Target Start/End: Original strand, 12384 - 12449
Alignment:
| Q |
286 |
tttggctgaggaaaaacaaattctgagggctataaacattcaacagaaagatgttgcttcgttcaa |
351 |
Q |
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| T |
12384 |
tttgggtgaagaaaaacaaattctgagagatataaagattcaacagaaagatgttgcttcattcaa |
12449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 12138 - 12206
Alignment:
| Q |
32 |
cggagaaaccgcgtggcgagtaaagagaagatacttatggatttatatatggctcttgatgaattgaat |
100 |
Q |
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| T |
12138 |
cggagaaacagtgtggcgattaaagggaaaatactaagggattttaatatggctcttgatgaattgaat |
12206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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