View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1133_low_70 (Length: 251)

Name: NF1133_low_70
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1133_low_70
NF1133_low_70
[»] chr2 (42 HSPs)
chr2 (40-245)||(2606521-2606729)
chr2 (71-243)||(2191265-2191440)
chr2 (71-240)||(21216971-21217142)
chr2 (71-240)||(21265260-21265431)
chr2 (71-214)||(21217220-21217363)
chr2 (71-214)||(21265039-21265182)
chr2 (79-240)||(10706521-10706685)
chr2 (71-243)||(7083570-7083745)
chr2 (71-186)||(3691316-3691431)
chr2 (74-239)||(24093427-24093595)
chr2 (79-244)||(39729472-39729640)
chr2 (71-192)||(2517461-2517582)
chr2 (74-211)||(3691134-3691271)
chr2 (71-212)||(24093204-24093345)
chr2 (71-211)||(32114213-32114353)
chr2 (71-213)||(21182355-21182497)
chr2 (79-240)||(32860870-32861033)
chr2 (71-182)||(21267299-21267410)
chr2 (121-214)||(32861112-32861205)
chr2 (71-153)||(32114431-32114513)
chr2 (136-240)||(21267175-21267283)
chr2 (36-71)||(21217379-21217414)
chr2 (36-73)||(2517410-2517447)
chr2 (38-71)||(21182306-21182339)
chr2 (38-71)||(21264990-21265023)
chr2 (36-73)||(39600769-39600806)
chr2 (39-71)||(2191217-2191249)
chr2 (37-68)||(21267429-21267460)
chr2 (36-71)||(23222921-23222956)
chr2 (71-117)||(2036599-2036645)
chr2 (37-71)||(24093154-24093188)
chr2 (38-68)||(32114165-32114195)
chr2 (37-71)||(32114529-32114563)
chr2 (38-71)||(21216922-21216955)
chr2 (38-71)||(21265447-21265480)
chr2 (71-112)||(39945890-39945931)
chr2 (71-103)||(1804279-1804311)
chr2 (71-103)||(1804673-1804705)
chr2 (71-103)||(6476134-6476166)
chr2 (71-103)||(6476528-6476560)
chr2 (71-103)||(11451197-11451229)
chr2 (71-103)||(27377696-27377728)
[»] chr5 (48 HSPs)
chr5 (79-237)||(18339129-18339290)
chr5 (71-240)||(87131-87303)
chr5 (71-240)||(31176555-31176727)
chr5 (72-240)||(3935563-3935735)
chr5 (76-214)||(8647964-8648102)
chr5 (75-240)||(35383292-35383460)
chr5 (71-208)||(31588251-31588388)
chr5 (39-240)||(35373454-35373668)
chr5 (79-235)||(16284330-16284494)
chr5 (79-214)||(13987338-13987474)
chr5 (71-243)||(30415351-30415525)
chr5 (71-151)||(8750322-8750402)
chr5 (79-240)||(15978446-15978608)
chr5 (75-211)||(1650056-1650195)
chr5 (71-211)||(18999542-18999682)
chr5 (39-178)||(38834714-38834855)
chr5 (79-244)||(3406515-3406683)
chr5 (89-211)||(29751724-29751845)
chr5 (89-211)||(29752390-29752511)
chr5 (139-214)||(18339372-18339447)
chr5 (79-175)||(3406798-3406894)
chr5 (71-134)||(18999414-18999477)
chr5 (72-211)||(8750059-8750200)
chr5 (137-240)||(26392148-26392253)
chr5 (38-75)||(31588401-31588438)
chr5 (71-118)||(18340645-18340692)
chr5 (37-76)||(31176505-31176544)
chr5 (84-134)||(3935451-3935501)
chr5 (36-70)||(18999699-18999733)
chr5 (40-72)||(8750417-8750449)
chr5 (40-72)||(16284275-16284307)
chr5 (38-70)||(18999365-18999397)
chr5 (36-71)||(4187894-4187929)
chr5 (39-74)||(8648120-8648155)
chr5 (37-76)||(22231213-22231252)
chr5 (73-111)||(87069-87107)
chr5 (36-72)||(87016-87052)
chr5 (38-70)||(3191797-3191829)
chr5 (71-103)||(5747202-5747234)
chr5 (71-103)||(6543462-6543494)
chr5 (71-103)||(14626099-14626131)
chr5 (71-103)||(21949447-21949479)
chr5 (71-103)||(21949841-21949873)
chr5 (71-103)||(28641602-28641634)
chr5 (36-68)||(30415544-30415576)
chr5 (71-103)||(31162468-31162500)
chr5 (36-72)||(35373618-35373654)
chr5 (71-103)||(39402259-39402291)
[»] scaffold0009 (4 HSPs)
scaffold0009 (74-243)||(107989-108161)
scaffold0009 (71-214)||(107770-107913)
scaffold0009 (36-71)||(108180-108215)
scaffold0009 (36-72)||(108006-108042)
[»] chr4 (60 HSPs)
chr4 (71-240)||(51906689-51906861)
chr4 (72-240)||(3296592-3296764)
chr4 (71-214)||(51906468-51906611)
chr4 (79-240)||(30608503-30608667)
chr4 (71-211)||(29691573-29691712)
chr4 (78-205)||(35166775-35166901)
chr4 (71-240)||(48553944-48554116)
chr4 (74-240)||(5544835-5545004)
chr4 (71-240)||(3296814-3296986)
chr4 (75-212)||(26168045-26168181)
chr4 (71-240)||(7118036-7118206)
chr4 (79-214)||(29691811-29691946)
chr4 (74-210)||(56106364-56106500)
chr4 (71-214)||(30952900-30953043)
chr4 (76-240)||(48759985-48760152)
chr4 (71-175)||(34129238-34129342)
chr4 (71-175)||(41510116-41510220)
chr4 (71-214)||(30608293-30608436)
chr4 (76-205)||(30047923-30048053)
chr4 (76-205)||(30062264-30062394)
chr4 (77-213)||(1791448-1791584)
chr4 (76-211)||(35468965-35469100)
chr4 (76-205)||(25916946-25917075)
chr4 (71-240)||(1791196-1791368)
chr4 (74-214)||(34294501-34294635)
chr4 (74-240)||(26168262-26168431)
chr4 (71-155)||(34129042-34129126)
chr4 (76-126)||(38759757-38759807)
chr4 (37-76)||(48553894-48553933)
chr4 (38-72)||(1791320-1791354)
chr4 (37-71)||(7118222-7118256)
chr4 (37-71)||(19310785-19310819)
chr4 (130-212)||(19310839-19310921)
chr4 (37-71)||(51906877-51906911)
chr4 (92-133)||(34397717-34397758)
chr4 (36-72)||(29691694-29691730)
chr4 (36-76)||(32192438-32192478)
chr4 (40-71)||(3296544-3296575)
chr4 (36-71)||(51906417-51906452)
chr4 (71-117)||(26984192-26984238)
chr4 (36-70)||(29691522-29691556)
chr4 (38-72)||(29691796-29691830)
chr4 (38-71)||(3297002-3297035)
chr4 (97-134)||(5545162-5545199)
chr4 (36-69)||(30608693-30608726)
chr4 (39-76)||(35166919-35166956)
chr4 (71-103)||(2669054-2669086)
chr4 (71-103)||(2669448-2669480)
chr4 (71-103)||(12108299-12108331)
chr4 (71-103)||(12922689-12922721)
chr4 (71-103)||(17288383-17288415)
chr4 (36-72)||(26168276-26168312)
chr4 (71-103)||(28957752-28957784)
chr4 (71-103)||(38026117-38026149)
chr4 (71-103)||(40841509-40841541)
chr4 (71-103)||(40841903-40841935)
chr4 (78-134)||(52398735-52398791)
chr4 (71-119)||(54142373-54142421)
chr4 (71-119)||(54143495-54143543)
chr4 (71-103)||(55347979-55348011)
[»] chr7 (39 HSPs)
chr7 (71-240)||(17075488-17075659)
chr7 (71-243)||(20543959-20544134)
chr7 (71-240)||(5029623-5029795)
chr7 (71-214)||(17075267-17075410)
chr7 (71-243)||(28838400-28838575)
chr7 (75-243)||(44803498-44803670)
chr7 (75-240)||(22948748-22948916)
chr7 (71-240)||(32092276-32092448)
chr7 (76-243)||(11974717-11974887)
chr7 (92-214)||(49053550-49053671)
chr7 (71-214)||(18152804-18152947)
chr7 (86-240)||(23548670-23548827)
chr7 (71-214)||(20544210-20544352)
chr7 (79-178)||(44803382-44803481)
chr7 (70-134)||(32092508-32092572)
chr7 (72-214)||(49053779-49053922)
chr7 (79-192)||(10466700-10466813)
chr7 (79-214)||(23548906-23549041)
chr7 (72-162)||(28852742-28852832)
chr7 (71-135)||(42750096-42750160)
chr7 (84-149)||(11975027-11975092)
chr7 (72-131)||(28854726-28854785)
chr7 (72-119)||(12908430-12908477)
chr7 (71-116)||(6621113-6621157)
chr7 (38-71)||(32092227-32092260)
chr7 (79-119)||(16755627-16755667)
chr7 (71-103)||(27310095-27310127)
chr7 (36-71)||(17075216-17075251)
chr7 (36-71)||(18443666-18443701)
chr7 (71-142)||(27311019-27311090)
chr7 (40-71)||(44803690-44803721)
chr7 (37-71)||(17075675-17075709)
chr7 (41-71)||(30938597-30938627)
chr7 (36-73)||(10466835-10466872)
chr7 (121-194)||(11992802-11992875)
chr7 (36-69)||(12933121-12933154)
chr7 (71-112)||(18443610-18443651)
chr7 (38-71)||(23548053-23548086)
chr7 (71-103)||(30939574-30939606)
[»] chr1 (43 HSPs)
chr1 (71-240)||(19895448-19895620)
chr1 (75-240)||(19895670-19895838)
chr1 (83-214)||(4288338-4288470)
chr1 (71-243)||(5683428-5683603)
chr1 (71-243)||(18180146-18180320)
chr1 (71-214)||(5683209-5683352)
chr1 (74-211)||(48155181-48155318)
chr1 (86-211)||(47541726-47541851)
chr1 (71-214)||(3591236-3591379)
chr1 (71-182)||(6751284-6751395)
chr1 (79-240)||(31436253-31436417)
chr1 (79-235)||(18179935-18180094)
chr1 (75-211)||(9880536-9880672)
chr1 (79-240)||(6751103-6751268)
chr1 (79-182)||(9880721-9880824)
chr1 (71-178)||(48155021-48155128)
chr1 (79-214)||(50359339-50359473)
chr1 (75-240)||(5172797-5172964)
chr1 (71-192)||(50359173-50359293)
chr1 (71-177)||(47541566-47541672)
chr1 (84-194)||(19976225-19976335)
chr1 (84-147)||(42723221-42723284)
chr1 (37-70)||(9880482-9880515)
chr1 (71-103)||(1500991-1501023)
chr1 (37-68)||(19895398-19895429)
chr1 (37-71)||(5172743-5172777)
chr1 (71-112)||(1500107-1500148)
chr1 (38-71)||(3591395-3591428)
chr1 (39-76)||(4288488-4288525)
chr1 (37-70)||(18179877-18179910)
chr1 (37-74)||(31436438-31436475)
chr1 (37-69)||(6751414-6751446)
chr1 (71-103)||(8997388-8997420)
chr1 (71-103)||(12869664-12869696)
chr1 (44-72)||(18180163-18180191)
chr1 (71-103)||(32266530-32266562)
chr1 (37-69)||(32596375-32596407)
chr1 (36-68)||(40124073-40124105)
chr1 (71-103)||(40124123-40124155)
chr1 (71-119)||(45230555-45230603)
chr1 (71-103)||(47410470-47410502)
chr1 (71-103)||(47410864-47410896)
chr1 (39-71)||(47542077-47542109)
[»] chr8 (37 HSPs)
chr8 (80-240)||(21005779-21005942)
chr8 (71-240)||(13315250-13315422)
chr8 (71-240)||(44024273-44024445)
chr8 (74-235)||(6297513-6297677)
chr8 (71-214)||(21006021-21006164)
chr8 (71-240)||(6297732-6297904)
chr8 (71-240)||(6297905-6298077)
chr8 (74-211)||(16662374-16662510)
chr8 (79-211)||(9800245-9800377)
chr8 (71-178)||(16662216-16662323)
chr8 (71-155)||(10047527-10047610)
chr8 (76-235)||(17915382-17915544)
chr8 (82-240)||(10047748-10047909)
chr8 (71-178)||(26997804-26997911)
chr8 (76-178)||(9800092-9800194)
chr8 (76-184)||(39234889-39234997)
chr8 (76-214)||(11089194-11089331)
chr8 (79-178)||(26243330-26243429)
chr8 (71-160)||(12489276-12489365)
chr8 (71-135)||(17914245-17914309)
chr8 (76-165)||(7344804-7344893)
chr8 (140-237)||(12489406-12489507)
chr8 (71-194)||(44148625-44148748)
chr8 (139-243)||(45369011-45369118)
chr8 (39-73)||(12489582-12489616)
chr8 (36-74)||(26997924-26997962)
chr8 (38-71)||(13315201-13315234)
chr8 (36-72)||(13315372-13315408)
chr8 (36-71)||(10047476-10047511)
chr8 (38-69)||(17915566-17915597)
chr8 (38-71)||(9800038-9800071)
chr8 (42-71)||(16662529-16662558)
chr8 (39-72)||(44024398-44024431)
chr8 (37-69)||(16662359-16662391)
chr8 (71-103)||(26720369-26720401)
chr8 (71-103)||(29917152-29917184)
chr8 (71-151)||(44803525-44803605)
[»] chr3 (47 HSPs)
chr3 (71-212)||(44504140-44504281)
chr3 (71-214)||(9217868-9218011)
chr3 (71-240)||(22814344-22814517)
chr3 (75-243)||(37172133-37172304)
chr3 (78-210)||(13637530-13637662)
chr3 (71-211)||(25770369-25770509)
chr3 (78-240)||(27013464-27013629)
chr3 (71-214)||(38485745-38485887)
chr3 (71-178)||(43933488-43933595)
chr3 (75-182)||(13637711-13637818)
chr3 (71-240)||(9218384-9218555)
chr3 (90-243)||(26741171-26741327)
chr3 (75-240)||(51471387-51471555)
chr3 (74-240)||(37172351-37172515)
chr3 (71-149)||(50732273-50732351)
chr3 (71-149)||(50780504-50780582)
chr3 (76-210)||(34743376-34743507)
chr3 (74-240)||(25770591-25770755)
chr3 (71-131)||(44504368-44504428)
chr3 (80-138)||(43933703-43933761)
chr3 (71-124)||(51755903-51755956)
chr3 (37-76)||(45728370-45728409)
chr3 (71-106)||(132066-132101)
chr3 (36-71)||(9218571-9218606)
chr3 (40-74)||(43933782-43933816)
chr3 (36-70)||(44504445-44504479)
chr3 (38-76)||(51471334-51471372)
chr3 (37-70)||(132118-132151)
chr3 (71-112)||(4199887-4199928)
chr3 (36-69)||(25770318-25770351)
chr3 (39-72)||(25770494-25770527)
chr3 (38-71)||(32837282-32837315)
chr3 (71-112)||(36899686-36899727)
chr3 (39-72)||(37172254-37172287)
chr3 (39-71)||(13637838-13637870)
chr3 (36-76)||(26741353-26741393)
chr3 (37-69)||(27013411-27013443)
chr3 (40-72)||(27013583-27013615)
chr3 (71-135)||(33225536-33225600)
chr3 (71-135)||(33226900-33226964)
chr3 (71-103)||(36899301-36899333)
chr3 (71-103)||(42606327-42606359)
chr3 (37-69)||(43933438-43933470)
chr3 (71-103)||(45539256-45539288)
chr3 (71-103)||(45539650-45539682)
chr3 (71-103)||(46689729-46689761)
chr3 (71-103)||(48868597-48868629)
[»] chr6 (28 HSPs)
chr6 (71-243)||(7645849-7646024)
chr6 (71-214)||(5974059-5974202)
chr6 (71-240)||(17157594-17157766)
chr6 (75-205)||(21113081-21113211)
chr6 (71-214)||(8710240-8710382)
chr6 (92-240)||(25932148-25932300)
chr6 (71-240)||(211594-211763)
chr6 (75-131)||(1869503-1869559)
chr6 (71-155)||(14712964-14713048)
chr6 (71-132)||(4510236-4510298)
chr6 (73-212)||(5975959-5976101)
chr6 (75-155)||(25932343-25932423)
chr6 (74-214)||(14712708-14712848)
chr6 (38-76)||(211440-211478)
chr6 (38-71)||(17157891-17157924)
chr6 (36-68)||(4510185-4510217)
chr6 (71-118)||(19595644-19595691)
chr6 (36-70)||(5974008-5974042)
chr6 (36-70)||(8710399-8710433)
chr6 (71-112)||(211489-211530)
chr6 (40-69)||(7646042-7646071)
chr6 (71-104)||(34984553-34984586)
chr6 (39-71)||(211779-211811)
chr6 (38-66)||(1869450-1869478)
chr6 (71-103)||(14257194-14257226)
chr6 (71-103)||(14257588-14257620)
chr6 (71-135)||(20522134-20522198)
chr6 (71-103)||(20824211-20824243)
[»] scaffold0063 (3 HSPs)
scaffold0063 (75-240)||(35062-35230)
scaffold0063 (71-212)||(34840-34981)
scaffold0063 (40-76)||(35245-35281)
[»] scaffold0933 (1 HSPs)
scaffold0933 (76-242)||(544-713)
[»] scaffold0085 (1 HSPs)
scaffold0085 (71-104)||(39861-39894)
[»] scaffold0177 (1 HSPs)
scaffold0177 (36-68)||(25903-25935)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 42)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 40 - 245
Target Start/End: Complemental strand, 2606729 - 2606521
Alignment:
Q  40 gttaaatatgtttttagtccttacattttgcgtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgc 139  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2606729 gttaaatatgtttttagtccttacattttgcgttcctacatttcattaaatgtttttaaaattctcatattttatctccgctatcaaaattagtccatgc 2606630  T
Q  140 tgttaattctttaacgaaatgttgatatgacagttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaag 236  Q
    ||||||||||||||||||||| |||| || ||||||||||||| ||||||||||| ||||||||||  |||||||   ||||||||||||||||||||||    
T  2606629 tgttaattctttaacgaaatgctgatgtggcagttagtgagtcccaattattttaagattaaatatgattttggttcctatattttgcatgactttgaag 2606530  T
Q  237 aataatcta 245  Q
    |||| ||||    
T  2606529 aatagtcta 2606521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 2191265 - 2191440
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||| |  |||| || |    
T  2191265 gtccttacatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtccatgttgttaattctttaacgaactactgatgtggc 2191364  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttgg---ttatattttgcatgactttgaagaataatc 243  Q
    |||||||| ||| |||||||||||| ||||||||| |||||||   ||| ||||||| ||||||||||||||||||    
T  2191365 agttagtgggtctcaattattttagaattaaatatgtttttggtccttacattttgcttgactttgaagaataatc 2191440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 21216971 - 21217142
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||| ||||| |||| ||||||| |    
T  21216971 gtccctacatttcattaaatgtttttaaaatcctcacattttatctccactatcaaaattagtccttgctgttaattctctaacggaatgctgatatggc 21217070  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    |||||||| ||| ||||||||||||| |||||||| ||| || |   || ||||||| |||||||||||||||    
T  21217071 agttagtgggtc-caattattttagggttaaatatgtttctgctccctacattttgcgtgactttgaagaata 21217142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 21265431 - 21265260
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||| ||||| |||| ||||||| |    
T  21265431 gtccctacatttcattaaatgtttttaaaatcctcacattttatctccactatcaaaattagtccttgctgttaattctctaacggaatgctgatatggc 21265332  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    |||||||| ||| ||||||||||||| |||||||| ||| || |   || ||||||| |||||||||||||||    
T  21265331 agttagtgggtc-caattattttagggttaaatatgtttctgctccctacattttgcgtgactttgaagaata 21265260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 71 - 214
Target Start/End: Complemental strand, 21217363 - 21217220
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||| || |||||||||||| ||| ||||||||||||||| |||| |||| || |    
T  21217363 gtccctacatttcattaaatgtttttaaaatcctcacattttatccccgttaacaaaattagtccctgccgttaattctttaacggaatgctgatgtggc 21217264  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt 214  Q
    |||||||| ||| ||||||||||| |||||||||| ||||||||    
T  21217263 agttagtgggtcccaattattttaagattaaatatgtttttggt 21217220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 21265039 - 21265182
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||| || |||||||||||| ||| ||||||||||||||| |||| |||| || |    
T  21265039 gtccctacatttcattaaatgtttttaaaatcctcacattttatccccgttaacaaaattagtccctgccgttaattctttaacggaatgctgatgtggc 21265138  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt 214  Q
    |||||||| ||| ||||||||||| |||||||||| ||||||||    
T  21265139 agttagtgggtcccaattattttaagattaaatatgtttttggt 21265182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 79 - 240
Target Start/End: Complemental strand, 10706685 - 10706521
Alignment:
Q  79 atttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtg 178  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||||| |||||| ||||||||||||| ||||  ||||||||| || |||||||||    
T  10706685 atttcattaaatatttttaaaatcctcacattttatctccgttatcaaaactagtccctgctgttaattctctaacagaatgttgatgtggcagttagtg 10706586  T
Q  179 agtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    |||| ||||||||||||||||||||| |||||| ||   || ||||||| ||||||| |||||||    
T  10706585 agtctcaattattttaggattaaatacatttttagtctctacattttgcgtgactttaaagaata 10706521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 7083570 - 7083745
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||  ||| |||| ||||   || |||||||||| ||||| |||| |||| || |    
T  7083570 gtccctacatttcattaaatttttttaaaatcctcacattttatctcccttataaaaaatagtatctgttgttaattctctaacggaatgctgatgtggc 7083669  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaataatc 243  Q
    |||||||||||| ||| ||||||||| |||||||| ||||||||   || ||||||||||||||||||||||||||    
T  7083670 agttagtgagtctcaactattttagggttaaatatgtttttggtccctacattttgcatgactttgaagaataatc 7083745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 3691431 - 3691316
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| | ||||| ||||||||| || |    
T  3691431 gtccctacatttcattaaatgtttttaaaatcttcacattttatctccgttatcaaaattagtccatgctgttaattttctaacggaatgttgatgtggc 3691332  T
Q  171 agttagtgagtcacaa 186  Q
    |||||||| |||||||    
T  3691331 agttagtgggtcacaa 3691316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 74 - 239
Target Start/End: Complemental strand, 24093595 - 24093427
Alignment:
Q  74 cctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagt 173  Q
    |||| |||| ||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| |||||||||||||| |||  |||||||  |||    
T  24093595 cctatattttattaaatgtttttaaaatccttacattttatctccgttatcaaaattagtccatgctcttaattctttaacggaatactgatatggtagt 24093496  T
Q  174 tagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaat 239  Q
    ||||| ||| |||| |||||||| |||||||| ||||| ||   || ||||| | ||||||||||||||    
T  24093495 tagtgggtctcaatcattttagggttaaatatgtttttcgtccctacattttacgtgactttgaagaat 24093427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 79 - 244
Target Start/End: Complemental strand, 39729640 - 39729472
Alignment:
Q  79 atttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtg 178  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||| ||||||||| ||| |||||||||| ||||| |||||| || ||||||||| ||    
T  39729640 atttcattaaatatttttaaaatcctcacattttatctccgttatcgaaattagtctatgttgttaattctctaacggaatgttaatgtgacagttaatg 39729541  T
Q  179 agtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaataatct 244  Q
      || ||||||||||||| |||||||| || || ||   | |||||||| |||||||||| ||||||||    
T  39729540 gatcccaattattttagggttaaatatgttcttagtctatgtattttgcgtgactttgaataataatct 39729472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 71 - 192
Target Start/End: Original strand, 2517461 - 2517582
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||  || |||||| ||||||||| |||| |||| || |    
T  2517461 gtccctacatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtctttgttgttaactctttaacggaatgctgatgtggc 2517560  T
Q  171 agttagtgagtcacaattattt 192  Q
    |||||||| |||  ||||||||    
T  2517561 agttagtgggtcctaattattt 2517582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 211
Target Start/End: Original strand, 3691134 - 3691271
Alignment:
Q  74 cctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagt 173  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| ||| ||||||||| |||||  ||||| || || | ||    
T  3691134 cctacatttcattaaatgtttttaaaatcctcacattttatcaccgttatcaaaattagtccctgcagttaattctctaacgggatgttaatgtggcggt 3691233  T
Q  174 tagtgagtcacaattattttaggattaaatatattttt 211  Q
    || || ||| ||||||||||||| |||||||| |||||    
T  3691234 taatgggtcccaattattttagggttaaatatgttttt 3691271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 71 - 212
Target Start/End: Original strand, 24093204 - 24093345
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||||||||||||||||||||||||| || || ||| || ||||||||| |||||||| |||||||||| ||||| |||| |||| ||||    
T  24093204 gtccctacatttcattaaatgtttttaaaatcctcacatcttctcttcgttatcaaaatcagtccatgttgttaattctctaacggaatgctgatgtgac 24093303  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttg 212  Q
    |||||||  ||  ||||||||||| | |||||||| ||||||    
T  24093304 agttagttggttccaattattttaaggttaaatatgtttttg 24093345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 71 - 211
Target Start/End: Original strand, 32114213 - 32114353
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    ||||||||| |  ||||||||||||||||||||||| |||||||||| | ||||||||||||||  | ||||||||||| ||||| ||||||||| || |    
T  32114213 gtccctacaatctattaaatgtttttaaaatcctcacattttatctctgatatcaaaattagtcgctactgttaattctctaacggaatgttgatgtggc 32114312  T
Q  171 agttagtgagtcacaattattttaggattaaatatattttt 211  Q
     |||||||  || ||||||||||||| ||||||||||||||    
T  32114313 ggttagtggctcccaattattttagggttaaatatattttt 32114353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 71 - 213
Target Start/End: Original strand, 21182355 - 21182497
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||| ||||||||||||||||||||||||||  ||| |||||||||| | ||||||||||||||  || |||||||||| |||||||||| |||| || |    
T  21182355 gtccttacatttcattaaatgtttttaaaattttcacattttatctctgttatcaaaattagtctctgttgttaattctctaacgaaatgctgatgtggc 21182454  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttgg 213  Q
    |||||||| ||| ||||||||||| | |||||| | |||||||    
T  21182455 agttagtgtgtcccaattattttaaggttaaatttgtttttgg 21182497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 240
Target Start/End: Original strand, 32860870 - 32861033
Alignment:
Q  79 atttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtg 178  Q
    |||||||||||||||||||||||||| | ||||||||||||  |||||||||||    || | |||||||| ||||| ||||||| | || |||||||||    
T  32860870 atttcattaaatgtttttaaaatcctaacattttatctccgtgatcaaaattagctattgttattaattctctaacggaatgttg-tgtggcagttagtg 32860968  T
Q  179 agtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
     ||| |||||||||| || |||||||| ||||||||   || ||||||| ||||| |||||||||    
T  32860969 ggtcccaattatttttgggttaaatatgtttttggtccctacattttgcgtgactctgaagaata 32861033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 182
Target Start/End: Complemental strand, 21267410 - 21267299
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    ||||||||||||||||||||||||| |||||||||| ||||||| | |  ||||||||||||||  || |||||||||| ||| | |||| |||| || |    
T  21267410 gtccctacatttcattaaatgttttaaaaatcctcacattttatattcattatcaaaattagtcactgatgttaattctctaatggaatgctgatgtgcc 21267311  T
Q  171 agttagtgagtc 182  Q
    ||||||||||||    
T  21267310 agttagtgagtc 21267299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 32861205 - 32861112
Alignment:
Q  121 tatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtgagtcacaattattttaggattaaatatatttttggt 214  Q
    ||||||||||||| ||||||||||||||| ||||| ||| ||||| || ||||||||| ||| |||||||||||   |||||||| ||||||||    
T  32861205 tatcaaaattagttcatgctgttaattctctaacggaatattgatgtggcagttagtgggtctcaattattttaatgttaaatatgtttttggt 32861112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 32114513 - 32114431
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaa 153  Q
    |||| ||||||||||||||| |||||||||| |||| | |||||||| | |||||||||||||||| |  |||||||||||||    
T  32114513 gtccttacatttcattaaatatttttaaaattctcacactttatctctgttatcaaaattagtccacgtagttaattctttaa 32114431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 21267175 - 21267283
Alignment:
Q  136 atgctgttaattctttaacgaaatgttgatatgacagttagtgagtcacaattattttaggattaaatatatttttgg----ttatattttgcatgactt 231  Q
    |||| ||||||||| ||||  ||||||||| ||||||||||||||||  | |||||||||| |||||||| ||||| |     || ||||||||||||||    
T  21267175 atgcagttaattctctaacagaatgttgatgtgacagttagtgagtcctagttattttagggttaaatatgttttttgatctctacattttgcatgactt 21267274  T
Q  232 tgaagaata 240  Q
    |||||||||    
T  21267275 tgaagaata 21267283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 21217414 - 21217379
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgcg 71  Q
    ||||||||||||||||||||||||||||||||||||    
T  21217414 tagggttaaatatgtttttagtccttacattttgcg 21217379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 2517410 - 2517447
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgcgtc 73  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  2517410 tagggttaaatatatttttagtccttacattttgcgtc 2517447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 21182306 - 21182339
Alignment:
Q  38 gggttaaatatgtttttagtccttacattttgcg 71  Q
    ||||||||||||||||||||||||||||||||||    
T  21182306 gggttaaatatgtttttagtccttacattttgcg 21182339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 21264990 - 21265023
Alignment:
Q  38 gggttaaatatgtttttagtccttacattttgcg 71  Q
    ||||||||||||||||||||||||||||||||||    
T  21264990 gggttaaatatgtttttagtccttacattttgcg 21265023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 39600769 - 39600806
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgcgtc 73  Q
    |||||||||||||||||||| |||||||||||||||||    
T  39600769 tagggttaaatatgtttttaatccttacattttgcgtc 39600806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 2191217 - 2191249
Alignment:
Q  39 ggttaaatatgtttttagtccttacattttgcg 71  Q
    |||||||||||||||||||||||||||||||||    
T  2191217 ggttaaatatgtttttagtccttacattttgcg 2191249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 21267460 - 21267429
Alignment:
Q  37 agggttaaatatgtttttagtccttacatttt 68  Q
    ||||||||||||||||||||||||||||||||    
T  21267460 agggttaaatatgtttttagtccttacatttt 21267429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 23222956 - 23222921
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgcg 71  Q
    |||||||||||||||||||||||| |||||||||||    
T  23222956 tagggttaaatatgtttttagtccctacattttgcg 23222921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 2036645 - 2036599
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctc 117  Q
    |||||||||||||| | ||||||||||||||||  ||||||||||||    
T  2036645 gtccctacatttcaattaatgtttttaaaatccctatattttatctc 2036599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 24093154 - 24093188
Alignment:
Q  37 agggttaaatatgtttttagtccttacattttgcg 71  Q
    |||||||||||||||||||||||||||| ||||||    
T  24093154 agggttaaatatgtttttagtccttacactttgcg 24093188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 68
Target Start/End: Original strand, 32114165 - 32114195
Alignment:
Q  38 gggttaaatatgtttttagtccttacatttt 68  Q
    |||||||||||||||||||||||||||||||    
T  32114165 gggttaaatatgtttttagtccttacatttt 32114195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 32114563 - 32114529
Alignment:
Q  37 agggttaaatatgtttttagtccttacattttgcg 71  Q
    |||||||||||| ||||||||||||||||||||||    
T  32114563 agggttaaatatatttttagtccttacattttgcg 32114529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 21216922 - 21216955
Alignment:
Q  38 gggttaaatatgtttttagtccttacattttgcg 71  Q
    ||||||||||| ||||||||||||||||||||||    
T  21216922 gggttaaatatctttttagtccttacattttgcg 21216955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 21265480 - 21265447
Alignment:
Q  38 gggttaaatatgtttttagtccttacattttgcg 71  Q
    ||||||||||| ||||||||||||||||||||||    
T  21265480 gggttaaatatctttttagtccttacattttgcg 21265447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 39945890 - 39945931
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatatttt 112  Q
    |||| ||||||||| ||||||||||||||||||| |||||||    
T  39945890 gtccttacatttcaataaatgtttttaaaatccttatatttt 39945931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 1804279 - 1804311
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  1804279 gtccctacatttcaataaatgtttttaaaatcc 1804311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 1804705 - 1804673
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  1804705 gtccctacatttcaataaatgtttttaaaatcc 1804673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 6476134 - 6476166
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  6476134 gtccctacatttcaataaatgtttttaaaatcc 6476166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 6476560 - 6476528
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  6476560 gtccctacatttcaataaatgtttttaaaatcc 6476528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 11451229 - 11451197
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  11451229 gtccctacatttcaataaatgtttttaaaatcc 11451197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 27377696 - 27377728
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  27377696 gtccctacatttcaataaatgtttttaaaatcc 27377728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 48)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 79 - 237
Target Start/End: Original strand, 18339129 - 18339290
Alignment:
Q  79 atttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtg 178  Q
    |||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||    
T  18339129 atttcattaaatgtttttaaaatcctcacattttatctccatcatcaaaattagtccatgctgttaattctctaacggaatgttgatgtgacagttagtg 18339228  T
Q  179 agtcacaattattttaggattaaatatatttttg---gttatattttgcatgactttgaaga 237  Q
     ||| |||||||||||||||||||||| ||||||    ||| ||||||| ||||||||||||    
T  18339229 ggtcccaattattttaggattaaatatgtttttgatccttacattttgcgtgactttgaaga 18339290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 87303 - 87131
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||  || |||||||||| ||||  ||||||||| ||      
T  87303 gtccctacatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtctttgttgttaattctctaacataatgttgatgtggt 87204  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    |||||||||||| ||||||||||||| |||||||| ||||||||   || |||||||||||||||||| ||||    
T  87203 agttagtgagtcccaattattttagggttaaatatgtttttggtccctacattttgcatgactttgaacaata 87131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 31176555 - 31176727
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||| ||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| ||||||||| ||||||||| |||  |||| ||||    
T  31176555 gtccatacatttcattaaatgtttttaaaatcgtcatattttatccccgttatcaaaattagtccttgctgttaactctttaacggaatactgatgtgac 31176654  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    | | |||||||| |||||||||||||||||||||| ||||||||   || |||| || |||||||||||||||    
T  31176655 attcagtgagtcccaattattttaggattaaatatgtttttggtccctacatttcgcgtgactttgaagaata 31176727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 72 - 240
Target Start/End: Complemental strand, 3935735 - 3935563
Alignment:
Q  72 tccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgaca 171  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||  | ||| ||||||||||  ||||||||||||| ||||||||||||||| || |     
T  3935735 tccctacatttcattaattgtttttaaaatcctcacattttatctttgttattaaaattagtctctgctgttaattctctaacgaaatgttgatgtggcg 3935636  T
Q  172 gttagtgagtcacaattattttaggattaaatatattttt-ggt---tatattttgcatgactttgaagaata 240  Q
    ||||||| ||| || |||||||||| |||||||| ||||| |||   || |||||||||||||||||||||||    
T  3935635 gttagtgggtcccagttattttagggttaaatatgttttttggtctctacattttgcatgactttgaagaata 3935563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 76 - 214
Target Start/End: Complemental strand, 8648102 - 8647964
Alignment:
Q  76 tacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtta 175  Q
    ||||||||||||||| ||||||||||||||| ||||| |||||| |||||||||||||| ||| |||||||||||||||| ||||||||| || ||||||    
T  8648102 tacatttcattaaatatttttaaaatcctcacattttttctccgttatcaaaattagtctatgttgttaattctttaacggaatgttgatgtggcagtta 8648003  T
Q  176 gtgagtcacaattattttaggattaaatatatttttggt 214  Q
    |||||||  |||||||||||| |||| || | |||||||    
T  8648002 gtgagtccaaattattttaggcttaattacacttttggt 8647964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 75 - 240
Target Start/End: Original strand, 35383292 - 35383460
Alignment:
Q  75 ctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtt 174  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| | ||||| |||  |||  || |||||    
T  35383292 ctacatttcattaaatgtttttaaaatcctcatattttatccccgttatcaaaattagtccatgctgttaattttctaacggaatactgaagtggcagtt 35383391  T
Q  175 agtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    || |  || ||||||||||||| |||||||| |||||| |   || ||||||| |||||||||||||||    
T  35383392 agcggatctcaattattttagggttaaatatgtttttgatccctacattttgcgtgactttgaagaata 35383460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 71 - 208
Target Start/End: Complemental strand, 31588388 - 31588251
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||||||||| ||||||||||||| | |||||||||||| ||||||||||||||| ||||||||||||| ||||| |||| |||| || |    
T  31588388 gtccctacatttcattaaatatttttaaaatcctaacattttatctccgttatcaaaattagtccctgctgttaattctctaacggaatgctgatgtggc 31588289  T
Q  171 agttagtgagtcacaattattttaggattaaatatatt 208  Q
     || |||| |||  |||||||||||| |||||||||||    
T  31588288 cgtcagtgggtccaaattattttagggttaaatatatt 31588251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 39 - 240
Target Start/End: Original strand, 35373454 - 35373668
Alignment:
Q  39 ggttaaatatgtttttagtccttacattttgcgtccct----------acatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaa 128  Q
    |||||||||| |||||||||||||||||||| ||||||          |||||||||||||| |||||||||||||||||||||||| ||| ||| ||||    
T  35373454 ggttaaatatatttttagtccttacattttgtgtccctttgaagaactacatttcattaaatatttttaaaatcctcatattttatccccgttattaaaa 35373553  T
Q  129 ttagtccatgctgttaattctttaacgaaatgttgatatgacagttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgca 225  Q
    ||||||  ||||||||||||| ||||| |||  |||| |   |||||||||||  ||||||||||||| |||||||| ||||||||   || |||||||     
T  35373554 ttagtcactgctgttaattctctaacggaatactgatgtagtagttagtgagtttcaattattttagggttaaatatgtttttggtccctacattttgcg 35373653  T
Q  226 tgactttgaagaata 240  Q
    | |||||||||||||    
T  35373654 taactttgaagaata 35373668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 79 - 235
Target Start/End: Original strand, 16284330 - 16284494
Alignment:
Q  79 atttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttga-----tatgacagt 173  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||  || |||||||||| ||||| |||| |||     | || ||||    
T  16284330 attttattaaatgtttttaaaatcctcatattttatctccgttatcaaaattagtcattgttgttaattctctaacggaatgctgatgtggtgtggcagt 16284429  T
Q  174 tagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaa 235  Q
    |||||  || |||||||||||||||||| ||||||||||||   |||||||||| ||||||||||    
T  16284430 tagtggatcccaattattttaggattaagtatatttttggtccctatattttgcgtgactttgaa 16284494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 79 - 214
Target Start/End: Original strand, 13987338 - 13987474
Alignment:
Q  79 atttcattaaatgttttt-aaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagt 177  Q
    |||||||||||||||||| ||||| |||| |||||||||||| ||| ||||||||||  ||||||||||||| ||||| |||| |||| |||||||||||    
T  13987338 atttcattaaatgttttttaaaattctcacattttatctccgttattaaaattagtctctgctgttaattctctaacggaatgatgatgtgacagttagt 13987437  T
Q  178 gagtcacaattattttaggattaaatatatttttggt 214  Q
    | ||| ||||||||||| | |||||||| ||||||||    
T  13987438 gggtctcaattattttatggttaaatatgtttttggt 13987474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 243
Target Start/End: Complemental strand, 30415525 - 30415351
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||||||| ||||||||||||||||| ||||| |||||| |||||||||||| |   ||||||||||||  |||| |||| |||| |||     
T  30415525 gtccctacatttcattaa-tgtttttaaaatcctcacattttgtctccgttatcaaaattaggctcagctgttaattctccaacggaatgctgatgtgat 30415427  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaataatc 243  Q
    |||||||| ||| ||||||||||||  |||||||| |||||| |   || ||||||  ||||||||||||||||||    
T  30415426 agttagtgggtcccaattattttagagttaaatatgtttttgatccctaaattttgtgtgactttgaagaataatc 30415351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 8750402 - 8750322
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattcttt 151  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  8750402 gtccctacattttattaaatgtgtttaaaatcctcatattttatctccgttatcaaaattagtccatgttgttaattcttt 8750322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 79 - 240
Target Start/End: Original strand, 15978446 - 15978608
Alignment:
Q  79 atttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtg 178  Q
    ||||||||||||||||||||||  |||| |||||||||| | ||| ||||||||||  || |||||||||||||||  |||| |||| || |||||||||    
T  15978446 atttcattaaatgtttttaaaa--ctcacattttatctcggttattaaaattagtcattgttgttaattctttaacagaatgctgatgtggcagttagtg 15978543  T
Q  179 agtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
     ||  |||||||||||||||||||||| |||||| |   || ||||||| |||||||||||||||    
T  15978544 ggttccaattattttaggattaaatatgtttttgatccctacattttgcgtgactttgaagaata 15978608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 211
Target Start/End: Original strand, 1650056 - 1650195
Alignment:
Q  75 ctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaat---tagtccatgctgttaattctttaacgaaatgttgatatgaca 171  Q
    |||||||| |||||||||||||||||| || |||||||||||||| |||||||||   || ||  || |||||||||||||||| ||||||||| |||||    
T  1650056 ctacattttattaaatgtttttaaaattcttatattttatctccgttatcaaaataattaatctctgttgttaattctttaacggaatgttgatgtgaca 1650155  T
Q  172 gttagtgagtcacaattattttaggattaaatatattttt 211  Q
    ||||    ||| ||||||||||| |||||||||| |||||    
T  1650156 gttaacaggtctcaattattttaagattaaatatgttttt 1650195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 71 - 211
Target Start/End: Complemental strand, 18999682 - 18999542
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||| ||||||||||||||| ||||||||||||||| |||||||||  | ||||||||||| ||  || |||||||||| ||||| |||| |||| || |    
T  18999682 gtccatacatttcattaaatatttttaaaatcctcacattttatctttgttatcaaaattaatcattgttgttaattctctaacggaatgatgatgtggc 18999583  T
Q  171 agttagtgagtcacaattattttaggattaaatatattttt 211  Q
    ||||||||  || ||||||||||||  |||||||| |||||    
T  18999582 agttagtggatcccaattattttagagttaaatatgttttt 18999542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 39 - 178
Target Start/End: Complemental strand, 38834855 - 38834714
Alignment:
Q  39 ggttaaatatgtttttagtccttacattttgc---gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtcc 135  Q
    |||||||||| |||||||||||||| ||||||   ||||||||||||||||||||||||||||||| | || |||| ||||| | |||| |||||||||     
T  38834855 ggttaaatatatttttagtccttacgttttgcatagtccctacatttcattaaatgtttttaaaattcacacatttgatctctgttatc-aaattagtct 38834757  T
Q  136 atgctgttaattctttaacgaaatgttgatatgacagttagtg 178  Q
     ||||||||||||| ||||| ||| ||||| ||  ||||||||    
T  38834756 ctgctgttaattctctaacggaatattgatgtgctagttagtg 38834714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 244
Target Start/End: Original strand, 3406515 - 3406683
Alignment:
Q  79 atttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtg 178  Q
    |||||||||||||||||||||||||| |||||||||||| | ||||||||||| |   || |||||||||||| ||  ||||||||| || ||||||||     
T  3406515 atttcattaaatgtttttaaaatccttatattttatctctgttatcaaaattaatatctgatgttaattctttcacagaatgttgatgtggcagttagta 3406614  T
Q  179 agtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaataatct 244  Q
    |||| ||||||||| |   |||||||| ||||  ||   || ||||||| ||||||| |||||||||||    
T  3406615 agtctcaattatttcaaacttaaatatgttttcagtccctacattttgcgtgactttaaagaataatct 3406683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 89 - 211
Target Start/End: Original strand, 29751724 - 29751845
Alignment:
Q  89 atgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtgagtcacaatt 188  Q
    ||||||||||||| |||| |||||||||| | ||||||||||||||| |||  |||||||| ||||| ||||||||| || | |||| || ||| |||||    
T  29751724 atgtttttaaaattctcacattttatctc-gttatcaaaattagtccctgcgcttaattctctaacggaatgttgatgtggcggttactgggtcccaatt 29751822  T
Q  189 attttaggattaaatatattttt 211  Q
    |||||||| |||||||| |||||    
T  29751823 attttagggttaaatatgttttt 29751845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 89 - 211
Target Start/End: Original strand, 29752390 - 29752511
Alignment:
Q  89 atgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtgagtcacaatt 188  Q
    ||||||||||||| |||| |||||||||| | ||||||||||||||| |||  |||||||| ||||| ||||||||| || | |||| || ||| |||||    
T  29752390 atgtttttaaaattctcacattttatctc-gttatcaaaattagtccctgcgcttaattctctaacggaatgttgatgtggcggttactgggtcccaatt 29752488  T
Q  189 attttaggattaaatatattttt 211  Q
    |||||||| |||||||| |||||    
T  29752489 attttagggttaaatatgttttt 29752511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 18339447 - 18339372
Alignment:
Q  139 ctgttaattctttaacgaaatgttgatatgacagttagtgagtcacaattattttaggattaaatatatttttggt 214  Q
    ||||||||||| ||||||||| ||||| ||| ||||||| |||| ||||||||||||| |||||||||||||||||    
T  18339447 ctgttaattctctaacgaaatattgatgtgatagttagtcagtcccaattattttagggttaaatatatttttggt 18339372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 3406894 - 3406798
Alignment:
Q  79 atttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtta 175  Q
    |||| ||||||| |||||||||| |||| |||||||||| | ||||||||||||||| || | |||||| | ||||| ||||||||| |||||||||    
T  3406894 attttattaaatatttttaaaattctcacattttatctctgttatcaaaattagtccctgatattaattttctaacggaatgttgatgtgacagtta 3406798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 18999414 - 18999477
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtc 134  Q
    |||| ||||||||||||||| ||||||||||||||  |||||||||||| ||||||||||||||    
T  18999414 gtccatacatttcattaaatatttttaaaatcctctcattttatctccgttatcaaaattagtc 18999477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 211
Target Start/End: Original strand, 8750059 - 8750200
Alignment:
Q  72 tccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattag--tccatgctgttaattctttaacgaaatgttgatatga 169  Q
    ||||||||||||||||||| ||||||||||| | |  |||||||| || ||||||||||||  || |  |||||||||||  |||   ||| ||||  |     
T  8750059 tccctacatttcattaaatatttttaaaatcgtaacgttttatcttcgttatcaaaattagtctctacactgttaattctccaacaggatgctgatgcgg 8750158  T
Q  170 cagttagtgagtcacaattattttaggattaaatatattttt 211  Q
    ||||||||||||| ||||||||||||| |||||| |||||||    
T  8750159 cagttagtgagtctcaattattttagggttaaatgtattttt 8750200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 240
Target Start/End: Complemental strand, 26392253 - 26392148
Alignment:
Q  137 tgctgttaattctttaacgaaatgttgatatgacagttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttg 233  Q
    ||||||||||||| ||||| |||| |||| || || |||||| ||| | ||||||||||| ||||||||| |||||||   |||||||||| ||||||||    
T  26392253 tgctgttaattctctaacggaatgatgatgtggcaattagtgggtctcgattattttagggttaaatata-ttttggtccctatattttgcgtgactttg 26392155  T
Q  234 aagaata 240  Q
    |||||||    
T  26392154 aagaata 26392148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 31588438 - 31588401
Alignment:
Q  38 gggttaaatatgtttttagtccttacattttgcgtccc 75  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31588438 gggttaaatatgtttttagtccttacattttgcgtccc 31588401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 18340692 - 18340645
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctcc 118  Q
    |||| ||||||||||||||||||||||||||| ||||||| |||||||    
T  18340692 gtccttacatttcattaaatgtttttaaaatcttcatattgtatctcc 18340645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 31176505 - 31176544
Alignment:
Q  37 agggttaaatatgtttttagtccttacattttgcgtccct 76  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  31176505 agggttaaatatgtttttagtccttatattttgcgtccct 31176544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 134
Target Start/End: Original strand, 3935451 - 3935501
Alignment:
Q  84 attaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtc 134  Q
    ||||||||||||||||||||||| |||||||||||  |||||| |||||||    
T  3935451 attaaatgtttttaaaatcctcacattttatctccattatcaatattagtc 3935501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 70
Target Start/End: Complemental strand, 18999733 - 18999699
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgc 70  Q
    |||||||||||||||||||||||||||||||||||    
T  18999733 tagggttaaatatgtttttagtccttacattttgc 18999699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 8750449 - 8750417
Alignment:
Q  40 gttaaatatgtttttagtccttacattttgcgt 72  Q
    |||||||||||||||||||||||||||||||||    
T  8750449 gttaaatatgtttttagtccttacattttgcgt 8750417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 16284275 - 16284307
Alignment:
Q  40 gttaaatatgtttttagtccttacattttgcgt 72  Q
    |||||||||||||||||||||||||||||||||    
T  16284275 gttaaatatgtttttagtccttacattttgcgt 16284307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 18999365 - 18999397
Alignment:
Q  38 gggttaaatatgtttttagtccttacattttgc 70  Q
    |||||||||||||||||||||||||||||||||    
T  18999365 gggttaaatatgtttttagtccttacattttgc 18999397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 4187929 - 4187894
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgcg 71  Q
    |||||||||||||||||||||||| |||||||||||    
T  4187929 tagggttaaatatgtttttagtccctacattttgcg 4187894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 8648155 - 8648120
Alignment:
Q  39 ggttaaatatgtttttagtccttacattttgcgtcc 74  Q
    ||||||||||| ||||||||||||||||||||||||    
T  8648155 ggttaaatatgattttagtccttacattttgcgtcc 8648120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 22231252 - 22231213
Alignment:
Q  37 agggttaaatatgtttttagtccttacattttgcgtccct 76  Q
    |||||||||||||||||||||||||| |||||||| ||||    
T  22231252 agggttaaatatgtttttagtccttatattttgcgcccct 22231213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 87069 - 87107
Alignment:
Q  73 ccctacatttcattaaatgtttttaaaatcctcatattt 111  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  87069 ccctacatttcattaaatgtttttaaaatcttcacattt 87107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 87016 - 87052
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgcgt 72  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  87016 tagggttaaatatgtttttagtctttatattttgcgt 87052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 3191797 - 3191829
Alignment:
Q  38 gggttaaatatgtttttagtccttacattttgc 70  Q
    |||||||||||||||||||||| ||||||||||    
T  3191797 gggttaaatatgtttttagtccctacattttgc 3191829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 5747234 - 5747202
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  5747234 gtccctacatttcaataaatgtttttaaaatcc 5747202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 6543462 - 6543494
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  6543462 gtccctacatttcaataaatgtttttaaaatcc 6543494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 14626131 - 14626099
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  14626131 gtccctacatttcaataaatgtttttaaaatcc 14626099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 21949447 - 21949479
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  21949447 gtccctacatttcaataaatgtttttaaaatcc 21949479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 21949873 - 21949841
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  21949873 gtccctacatttcaataaatgtttttaaaatcc 21949841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 28641634 - 28641602
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  28641634 gtccctacatttcaataaatgtttttaaaatcc 28641602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 30415576 - 30415544
Alignment:
Q  36 tagggttaaatatgtttttagtccttacatttt 68  Q
    |||||||||||||| ||||||||||||||||||    
T  30415576 tagggttaaatatggttttagtccttacatttt 30415544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 31162468 - 31162500
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  31162468 gtccctacatttcaataaatgtttttaaaatcc 31162500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 35373618 - 35373654
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgcgt 72  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  35373618 tagggttaaatatgtttttggtccctacattttgcgt 35373654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 39402259 - 39402291
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  39402259 gtccctacatttcaataaatgtttttaaaatcc 39402291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 74 - 243
Target Start/End: Complemental strand, 108161 - 107989
Alignment:
Q  74 cctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagt 173  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||  ||||||||||||| ||| | |||| |||| || ||||    
T  108161 cctacatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtctctgctgttaattctctaatggaatgctgatgtggcagt 108062  T
Q  174 tagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaataatc 243  Q
    ||||| ||| ||||||||||||| |||||||| ||||||||   || ||||||| ||||||||||||||||||    
T  108061 tagtgggtcccaattattttagggttaaatatgtttttggtccctacattttgcgtgactttgaagaataatc 107989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 107770 - 107913
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||| ||||| ||||||||||||||| |||||||||||| |||||||| ||||||||| |||||||||| ||||| |||| |||| ||||    
T  107770 gtccctacatttcaataaatatttttaaaatcctcacattttatctccgttatcaaaaatagtccatgttgttaattctctaacggaatgctgatgtgac 107869  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt 214  Q
    |||||||| ||| ||||||||||| | |||||||| ||||||||    
T  107870 agttagtgggtcccaattattttaaggttaaatatgtttttggt 107913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 108215 - 108180
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgcg 71  Q
    |||| |||||||||||||||||||||||||||||||    
T  108215 taggattaaatatgtttttagtccttacattttgcg 108180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 108042 - 108006
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgcgt 72  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  108042 tagggttaaatatgtttttggtccctacattttgcgt 108006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 60)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 51906861 - 51906689
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||   ||||||||||||| ||||| ||||||||| |||     
T  51906861 gtccctacatctcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtttctgctgttaattctctaacggaatgttgatgtgag 51906762  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    |||||||| ||| ||||||||||||| ||||||||  |||||||   || |||||||||||||||||||||||    
T  51906761 agttagtgggtcgcaattattttagggttaaatatgattttggtccctacattttgcatgactttgaagaata 51906689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 72 - 240
Target Start/End: Original strand, 3296592 - 3296764
Alignment:
Q  72 tccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagt-ccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| || || |||||||||||||||| ||| ||||  || |    
T  3296592 tccctacatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtcccctgatgttaattctttaacggaatattgacgtggc 3296691  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    ||||||||  || ||||||||||||||||||||||||||||| |   || ||||||| |||||||||||||||    
T  3296692 agttagtggatcccaattattttaggattaaatatatttttgatccctacattttgcgtgactttgaagaata 3296764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 51906468 - 51906611
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||| ||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| || |||||| ||||||||| ||| ||||| ||||    
T  51906468 gtccctacgtttcattaaatgtttttaatatcctcacattttatctccgttatcaaaattagtccctgatgttaactctttaacggaatattgatgtgac 51906567  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt 214  Q
    |||||||| | | ||||||||||| |||||||||| ||||||||    
T  51906568 agttagtgggccccaattattttaagattaaatatgtttttggt 51906611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 79 - 240
Target Start/End: Complemental strand, 30608667 - 30608503
Alignment:
Q  79 atttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtg 178  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||  || |||||||| ||||||| |||| || | || |||||||||    
T  30608667 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtcactgttgttaattatttaacggaatgctgctgtggcagttagtg 30608568  T
Q  179 agtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    | || |||||||||||||||||||||| ||||||||   || ||||||| ||||||| |||||||    
T  30608567 aatcccaattattttaggattaaatatgtttttggtccctagattttgcgtgacttttaagaata 30608503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 71 - 211
Target Start/End: Original strand, 29691573 - 29691712
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||  | ||||||||||| ||| | ||||||||| ||||    
T  29691573 gtccctacatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtctctactgttaattctctaatggaatgttgatgtgac 29691672  T
Q  171 agttagtgagtcacaattattttaggattaaatatattttt 211  Q
    ||||||||  || ||||||||||||| |||||||| |||||    
T  29691673 agttagtggatc-caattattttagggttaaatatgttttt 29691712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 78 - 205
Target Start/End: Complemental strand, 35166901 - 35166775
Alignment:
Q  78 catttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagt 177  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||  ||||||||||||| ||||| || | |||| |||||||||||    
T  35166901 catttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtctctgctgttaattctctaacggaa-gctgatgtgacagttagt 35166803  T
Q  178 gagtcacaattattttaggattaaatat 205  Q
    ||||| ||||||||||| ||||||||||    
T  35166802 gagtctcaattattttatgattaaatat 35166775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 48553944 - 48554116
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||| ||||||||||||||  ||||||||||||||| |||||||||||| ||||||||||||||  || |||||||||||||||| |||| |||| ||||    
T  48553944 gtccatacatttcattaaacctttttaaaatcctcacattttatctccgttatcaaaattagtcattgttgttaattctttaacggaatgctgatgtgac 48554043  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    |||||||   || |||||| |||| |||||||||| ||||||||   || ||||||| |||||||||||||||    
T  48554044 agttagtagatcccaattagtttaagattaaatatgtttttggtccctacattttgcgtgactttgaagaata 48554116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 74 - 240
Target Start/End: Original strand, 5544835 - 5545004
Alignment:
Q  74 cctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagt 173  Q
    |||| |||||||||||| |||||||||| |||| |||||||||||  |||  |||||||||||| ||||||||| ||||||| ||||||||| || ||||    
T  5544835 cctatatttcattaaatatttttaaaattctcacattttatctcctttattcaaattagtccatactgttaattttttaacggaatgttgatgtggcagt 5544934  T
Q  174 tagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    ||||| |||  || ||||||||| |||||||| ||||||||   || |||||||||||||||||||||||    
T  5544935 tagtgggtcgtaaatattttagggttaaatatgtttttggtccctacattttgcatgactttgaagaata 5545004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 3296986 - 3296814
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||| ||||||||||||||||||||||||| | |||||||||||| ||||||||||||||| || | ||||| || ||||  |||| |||| || |    
T  3296986 gtccctacgtttcattaaatgtttttaaaatccttacattttatctccgttatcaaaattagtccctgatattaatcctctaacagaatgctgatgtggc 3296887  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    |||||||| ||| ||||||||||| | |||||||| ||||||||   |||||||||| ||||||| |||||||    
T  3296886 agttagtgggtcccaattattttaaggttaaatatgtttttggtccatatattttgcgtgactttaaagaata 3296814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 75 - 212
Target Start/End: Original strand, 26168045 - 26168181
Alignment:
Q  75 ctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtt 174  Q
    |||||||| ||||||| ||||||||||||||| |||||||||||| ||||||||||||||  ||||||||||||| ||||| |||| |||| ||||||||    
T  26168045 ctacattt-attaaatatttttaaaatcctcacattttatctccgttatcaaaattagtctctgctgttaattctctaacggaatgctgatgtgacagtt 26168143  T
Q  175 agtgagtcacaattattttaggattaaatatatttttg 212  Q
    |||| ||| ||||||||||| | |||||||| ||||||    
T  26168144 agtgggtcccaattattttaaggttaaatatgtttttg 26168181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 7118206 - 7118036
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||| |||||||||||||||||||||||||| |||| |||||||||||  ||||||||||||||||||||||||||||| || |  |||| | || || |    
T  7118206 gtccatacatttcattaaatgtttttaaaattctcaaattttatctccattatcaaaattagtccatgctgttaattctctatcagaatgctaatgtggc 7118107  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt--tatattttgcatgactttgaagaata 240  Q
    |||||||||||| ||||||||| ||| |||||||| ||||||||  || |||||||  ||||||||| ||||    
T  7118106 agttagtgagtcccaattatttaagg-ttaaatatgtttttggtcctacattttgcgcgactttgaaaaata 7118036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 79 - 214
Target Start/End: Complemental strand, 29691946 - 29691811
Alignment:
Q  79 atttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtg 178  Q
    |||||||||||| ||||||||||||||| |||||||||| | ||||||||||||||||||| ||||||||| ||||| || |||||| ||  ||||||||    
T  29691946 atttcattaaatatttttaaaatcctcacattttatctctgttatcaaaattagtccatgcggttaattctctaacggaacgttgatgtggtagttagtg 29691847  T
Q  179 agtcacaattattttaggattaaatatatttttggt 214  Q
     ||| |||||||||| || |||||||| ||||||||    
T  29691846 ggtcccaattatttttgggttaaatatgtttttggt 29691811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 74 - 210
Target Start/End: Complemental strand, 56106500 - 56106364
Alignment:
Q  74 cctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagt 173  Q
    |||| |||| ||||||||||||||||||||||  |||||||||||| ||| ||||||||||| || |||||||||| ||||  ||||||||| ||||| |    
T  56106500 cctatattttattaaatgtttttaaaatcctctcattttatctccgttattaaaattagtccctgatgttaattctctaacataatgttgatgtgacaat 56106401  T
Q  174 tagtgagtcacaattattttaggattaaatatatttt 210  Q
    ||||| ||| ||||||||||| | |||||||||||||    
T  56106400 tagtgggtcccaattattttaaggttaaatatatttt 56106364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 214
Target Start/End: Complemental strand, 30953043 - 30952900
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||||||||||||||||||||||| | |||||||||| | ||| ||||||||||| || |||||||||| ||||  ||||||||| || |    
T  30953043 gtccctacatttcattaaatgtttttaaaatcctaacattttatctcggttattaaaattagtccttgttgttaattctctaacagaatgttgatgtggc 30952944  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt 214  Q
     ||||||| |||  |||||||||| | |||||||| ||||||||    
T  30952943 ggttagtgggtcctaattattttaaggttaaatatgtttttggt 30952900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 76 - 240
Target Start/End: Complemental strand, 48760152 - 48759985
Alignment:
Q  76 tacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtta 175  Q
    |||| |||||||||||||||||||||| ||| |||||||||| | ||||||||||| |||||| |||||||||| | | | |||||| || || ||||||    
T  48760152 tacaattcattaaatgtttttaaaatcttcacattttatctctgttatcaaaattaatccatgttgttaattctctgaaggaatgttaatgtggcagtta 48760053  T
Q  176 gtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    ||| ||| | ||||||||||| |||||||| ||||||||   |||||||||  |||||| ||||||||    
T  48760052 gtgggtcccgattattttagggttaaatatgtttttggtccctatattttgtgtgacttcgaagaata 48759985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 34129342 - 34129238
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||| | |||||||||||||||| ||||||||||||  |||| |||| |||| ||||    
T  34129342 gtccctacatttcattaaatatttttaaaatcctcacattttatctctgttatcaaaattagtccaagctgttaattctccaacggaatgctgatgtgac 34129243  T
Q  171 agtta 175  Q
    |||||    
T  34129242 agtta 34129238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 41510116 - 41510220
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||| ||||||| ||| |||||||||||||||||||||||  ||||||||||||||  || |||||||||| |||||||||| |||||||||    
T  41510116 gtccctacattttattaaatatttctaaaatcctcatattttatctcccttatcaaaattagtcactgttgttaattctctaacgaaatgctgatatgac 41510215  T
Q  171 agtta 175  Q
    |||||    
T  41510216 agtta 41510220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 30608293 - 30608436
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    ||||||||||||||||| || ||||||||||||||| |||||||||||| ||||||||||||||  |||| |||||||| ||||   || ||||| || |    
T  30608293 gtccctacatttcattatatatttttaaaatcctcacattttatctccgttatcaaaattagtctctgctattaattctctaacaggatattgatgtggc 30608392  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt 214  Q
    |||||||| | | ||||||||||||| | |||||| ||||||||    
T  30608393 agttagtgggacccaattattttagggtcaaatatgtttttggt 30608436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 30048053 - 30047923
Alignment:
Q  76 tacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtta 175  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||  || |||||||| | ||||| ||||||||| |||| | ||    
T  30048053 tacatttcattaaatatttttaaaatcctcatattttatctccgttattaaaattagtctctgttgttaattatctaacggaatgttgatgtgacggcta 30047954  T
Q  176 gt-gagtcacaattattttaggattaaatat 205  Q
    || || || | ||||||||||||||||||||    
T  30047953 gtggaatcccgattattttaggattaaatat 30047923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 30062394 - 30062264
Alignment:
Q  76 tacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtta 175  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||  || |||||||| | ||||| ||||||||| |||| | ||    
T  30062394 tacatttcattaaatatttttaaaatcctcatattttatctccgttattaaaattagtctctgttgttaattatctaacggaatgttgatgtgacggcta 30062295  T
Q  176 gt-gagtcacaattattttaggattaaatat 205  Q
    || || || | ||||||||||||||||||||    
T  30062294 gtggaatcccgattattttaggattaaatat 30062264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 213
Target Start/End: Complemental strand, 1791584 - 1791448
Alignment:
Q  77 acatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttag 176  Q
    |||||| ||||||||||||||||||| | | |||||||||||| ||| ||||||||||  ||||||||||||| ||||  ||||||||| || |||||||    
T  1791584 acattttattaaatgtttttaaaatctttacattttatctccgttattaaaattagtctctgctgttaattctctaactgaatgttgatgtggcagttag 1791485  T
Q  177 tgagtcacaattattttaggattaaatatatttttgg 213  Q
    || ||  ||||||||||| | |||||||| |||||||    
T  1791484 tgtgttccaattattttaaggttaaatatgtttttgg 1791448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 76 - 211
Target Start/End: Complemental strand, 35469100 - 35468965
Alignment:
Q  76 tacatttcattaaatgtttttaaaatcctcatatttt-atctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtt 174  Q
    |||||||||||||| |||||||||||||||| ||||| ||||||| ||||||||||| |||||| |||||||||||||||| |||  || | ||||||||    
T  35469100 tacatttcattaaa-gtttttaaaatcctcaaatttttatctccgttatcaaaattaatccatgttgttaattctttaacggaatactgctgtgacagtt 35469002  T
Q  175 agtgagtcacaattattttaggattaaatatattttt 211  Q
    || |  || ||||||||||| | |||||||| |||||    
T  35469001 agcggatcccaattattttaaggttaaatatgttttt 35468965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 25917075 - 25916946
Alignment:
Q  76 tacatttcattaaatgtttttaaaatcctcatattttatctcc--gctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagt 173  Q
    ||||||||||||||||||||||||||  ||||||||||||| |  | ||| |||||||||   |||| |||||||| |||||||||| |||| |||||||    
T  25917075 tacatttcattaaatgtttttaaaattttcatattttatcttcgtgttatgaaaattagtgtctgcttttaattctctaacgaaatgctgatgtgacagt 25916976  T
Q  174 tagtgagtcacaattattttaggattaaatat 205  Q
    ||||| ||| |||||||||||| |||||||||    
T  25916975 tagtg-gtc-caattattttagtattaaatat 25916946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 1791196 - 1791368
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||| |||||||||||||||||||| |||||||||| | |||||  | | |||||||||||||| ||| |||||||||| ||||| |||| | || || |    
T  1791196 gtccatacatttcattaaatgttttaaaaatcctcaaactttatacctgttatcaaaattagtcgatgttgttaattctctaacggaatgctaatgtggc 1791295  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttgg---ttatattttgcatgactttgaagaata 240  Q
     | |||||  || |||||||||| || |||||||| ||||| |   ||| ||||||| |||||||||||||||    
T  1791296 cggtagtggatcccaattatttttgggttaaatatgtttttagtccttacattttgcgtgactttgaagaata 1791368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 74 - 214
Target Start/End: Original strand, 34294501 - 34294635
Alignment:
Q  74 cctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagt 173  Q
    ||||||||||||||||||||||||||||| ||| ||     ||||  ||| ||||||| |   || ||||||||||||||||||||  |||| || ||||    
T  34294501 cctacatttcattaaatgtttttaaaatcttcacat-----ctccattattaaaattaatatctgatgttaattctttaacgaaatactgatgtgtcagt 34294595  T
Q  174 tagtgagtcacaattattttaggattaaatatatttttggt 214  Q
    ||||||||| |||||||||||| ||||||||| ||||||||    
T  34294596 tagtgagtc-caattattttagaattaaatatgtttttggt 34294635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 240
Target Start/End: Complemental strand, 26168431 - 26168262
Alignment:
Q  74 cctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagt 173  Q
    ||||||||| ||||||||||| |||||||  || |||||||||  | |||||||||||||||||| | ||||| ||  |||  |  ||| || || |||     
T  26168431 cctacattttattaaatgtttctaaaatctccacattttatctttgttatcaaaattagtccatgttattaatgctcaaacagaccgttaatgtggcagg 26168332  T
Q  174 tagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    ||||| ||| ||||||||||||| |||||||| ||||||||   || ||||||| |||||||||||||||    
T  26168331 tagtgggtctcaattattttagggttaaatatgtttttggtccctacattttgcgtgactttgaagaata 26168262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 34129042 - 34129126
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacg 155  Q
    ||||||| |||| |||||| ||||||||||| |||||||||||||| || ||||||| |||||| ||| |||||||||| |||||    
T  34129042 gtccctatattttattaaacgtttttaaaattctcatattttatcttcgttatcaaagttagtctatgttgttaattctctaacg 34129126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 38759757 - 38759807
Alignment:
Q  76 tacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaa 126  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  38759757 tacatttcattaaatgtttttaaaatcctcaaattttatctccgttatcaa 38759807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 48553894 - 48553933
Alignment:
Q  37 agggttaaatatgtttttagtccttacattttgcgtccct 76  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  48553894 agggttaaatacgtttttagtccttacattttgcgtccct 48553933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 1791320 - 1791354
Alignment:
Q  38 gggttaaatatgtttttagtccttacattttgcgt 72  Q
    |||||||||||||||||||||||||||||||||||    
T  1791320 gggttaaatatgtttttagtccttacattttgcgt 1791354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 7118256 - 7118222
Alignment:
Q  37 agggttaaatatgtttttagtccttacattttgcg 71  Q
    |||||||||||||||||||||||||||||||||||    
T  7118256 agggttaaatatgtttttagtccttacattttgcg 7118222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 19310785 - 19310819
Alignment:
Q  37 agggttaaatatgtttttagtccttacattttgcg 71  Q
    |||||||||||||||||||||||||||||||||||    
T  19310785 agggttaaatatgtttttagtccttacattttgcg 19310819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 19310839 - 19310921
Alignment:
Q  130 tagtccatgctgttaattctttaacgaaatgttgatatgacagttagtgagtcacaattattttaggattaaatatatttttg 212  Q
    |||||| | ||||||| ||||||| | ||||||||| ||| |||||||| ||| ||||||||||| | |||||||| ||||||    
T  19310839 tagtccctactgttaactctttaatggaatgttgatgtgatagttagtgggtcccaattattttaagtttaaatatgtttttg 19310921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 51906911 - 51906877
Alignment:
Q  37 agggttaaatatgtttttagtccttacattttgcg 71  Q
    |||||||||||||||||||||||||||||||||||    
T  51906911 agggttaaatatgtttttagtccttacattttgcg 51906877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 34397717 - 34397758
Alignment:
Q  92 tttttaaaatcctcatattttatctccgctatcaaaattagt 133  Q
    ||||||||||||||||||||||||| || |||||||||||||    
T  34397717 tttttaaaatcctcatattttatcttcgttatcaaaattagt 34397758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 29691694 - 29691730
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgcgt 72  Q
    |||||||||||||||||||||||| ||||||||||||    
T  29691694 tagggttaaatatgtttttagtccctacattttgcgt 29691730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 32192438 - 32192478
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgcgtccct 76  Q
    ||||||||||||||||||||||||| |||||||||| ||||    
T  32192438 tagggttaaatatgtttttagtcctcacattttgcgcccct 32192478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 71
Target Start/End: Original strand, 3296544 - 3296575
Alignment:
Q  40 gttaaatatgtttttagtccttacattttgcg 71  Q
    ||||||||||||||||||||||||||||||||    
T  3296544 gttaaatatgtttttagtccttacattttgcg 3296575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 51906417 - 51906452
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgcg 71  Q
    ||||||||||||||||||||||| ||||||||||||    
T  51906417 tagggttaaatatgtttttagtctttacattttgcg 51906452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 26984192 - 26984238
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctc 117  Q
    ||||||| | || ||||||||||||||||||||||| ||||||||||    
T  26984192 gtccctagactttattaaatgtttttaaaatcctcacattttatctc 26984238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 29691522 - 29691556
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgc 70  Q
    ||||||||||||||||||||||||||| |||||||    
T  29691522 tagggttaaatatgtttttagtccttatattttgc 29691556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 29691830 - 29691796
Alignment:
Q  38 gggttaaatatgtttttagtccttacattttgcgt 72  Q
    ||||||||||||||||| |||||||||||||||||    
T  29691830 gggttaaatatgtttttggtccttacattttgcgt 29691796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 3297035 - 3297002
Alignment:
Q  38 gggttaaatatgtttttagtccttacattttgcg 71  Q
    ||||||||||| ||||||||||||||||||||||    
T  3297035 gggttaaatatatttttagtccttacattttgcg 3297002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 5545199 - 5545162
Alignment:
Q  97 aaaatcctcatattttatctccgctatcaaaattagtc 134  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  5545199 aaaatcctcacattttatctccgttatcaaaattagtc 5545162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 30608726 - 30608693
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttg 69  Q
    ||||||||||||||||||||| ||||||||||||    
T  30608726 tagggttaaatatgtttttagaccttacattttg 30608693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 35166956 - 35166919
Alignment:
Q  39 ggttaaatatgtttttagtccttacattttgcgtccct 76  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  35166956 ggttaaatatgtctttagtgcttacattttgcgtccct 35166919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 2669054 - 2669086
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  2669054 gtccctacatttcaataaatgtttttaaaatcc 2669086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 2669480 - 2669448
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  2669480 gtccctacatttcaataaatgtttttaaaatcc 2669448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 12108331 - 12108299
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  12108331 gtccctacatttcaataaatgtttttaaaatcc 12108299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 12922689 - 12922721
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  12922689 gtccctacatttcaataaatgtttttaaaatcc 12922721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 17288415 - 17288383
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  17288415 gtccctacatttcaataaatgtttttaaaatcc 17288383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 26168312 - 26168276
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgcgt 72  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  26168312 tagggttaaatatgtttttggtccctacattttgcgt 26168276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 28957784 - 28957752
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  28957784 gtccctacatttcaataaatgtttttaaaatcc 28957752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 38026149 - 38026117
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  38026149 gtccctacatttcaataaatgtttttaaaatcc 38026117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 40841509 - 40841541
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  40841509 gtccctacatttcaataaatgtttttaaaatcc 40841541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 40841935 - 40841903
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  40841935 gtccctacatttcaataaatgtttttaaaatcc 40841903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 52398735 - 52398791
Alignment:
Q  78 catttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtc 134  Q
    ||||| ||||||| |||||||||| || ||||||||| | || ||||||||||||||    
T  52398735 cattttattaaatatttttaaaattcttatattttattttcgttatcaaaattagtc 52398791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 54142373 - 54142421
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccg 119  Q
    |||| ||||||||| ||||||||||||||||||| | ||||| ||||||    
T  54142373 gtccatacatttcaataaatgtttttaaaatccttacattttctctccg 54142421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 54143543 - 54143495
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccg 119  Q
    |||||||||||| | ||||||||||||||||||| | ||||| ||||||    
T  54143543 gtccctacattttaataaatgtttttaaaatccttacattttctctccg 54143495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #60
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 55348011 - 55347979
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  55348011 gtccctacatttcaataaatgtttttaaaatcc 55347979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 17075659 - 17075488
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||| |||||||| ||||| |||| ||||||| |    
T  17075659 gtccctacatttcattaaatgtttttaaaatcctcacattttatctccactatcaaaattagtccttgctattaattctctaacggaatgctgatatggc 17075560  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    |||||||| ||| ||||||||||||| |||||||| ||| || |   || ||||||| |||||||||||||||    
T  17075559 agttagtgggtc-caattattttagggttaaatatgtttctgctccctacattttgcgtgactttgaagaata 17075488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 20543959 - 20544134
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||   ||||||||||||| |||||| ||| |||| |||     
T  20543959 gtccctacatttcattaaatttttttaaaatcctcatattttatctccgttatcaaaattagtttctgctgttaattctctaacgagatggtgatgtgat 20544058  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaataatc 243  Q
    ||||||||  || || ||||||| || |||||||| ||||| ||   || ||||||||||||||||||||||||||    
T  20544059 agttagtggatcgcagttatttttgggttaaatatgttttttgttcctacattttgcatgactttgaagaataatc 20544134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 5029795 - 5029623
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    ||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||| | ||||  |||| |||| || |    
T  5029795 gtccctatatttcattaaatgtttttaaa-tcctcacattttatctccgctatcaaaattagtccatgttgttaattatctaacagaatgctgatgtggc 5029697  T
Q  171 agttagtgagtcacaattattttaggattaaatat-atttttggt---tatattttgcatgactttgaagaata 240  Q
    |||||||| ||| ||||||||||||| ||||||||  ||||||||   |||||||||| |||||||||||||||    
T  5029696 agttagtgggtcccaattattttagggttaaatatgttttttggtccctatattttgcgtgactttgaagaata 5029623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 17075267 - 17075410
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    ||||||||||||||||||| |||||||||||||||| |||||||| ||| || |||||||||||| ||| ||||||||||||||| |||| |||| || |    
T  17075267 gtccctacatttcattaaaagtttttaaaatcctcacattttatccccgttaacaaaattagtccttgccgttaattctttaacggaatgctgatgtggc 17075366  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt 214  Q
    |||||||| ||| ||||||||||| |||||||||| ||||||||    
T  17075367 agttagtgggtcccaattattttaagattaaatatgtttttggt 17075410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 28838400 - 28838575
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||  || |||||||||| |||||||||| |||| || |    
T  28838400 gtcccgacatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtcattggtgttaattctctaacgaaatgctgatgtggc 28838499  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaataatc 243  Q
    |||||||| ||  ||||||||||| | |||||||| ||||||||   || ||||||||| | |||||| |||||||    
T  28838500 agttagtgggttccaattattttaaggttaaatatgtttttggtccctacattttgcatcattttgaaaaataatc 28838575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 75 - 243
Target Start/End: Complemental strand, 44803670 - 44803498
Alignment:
Q  75 ctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtt 174  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||| | ||| | ||||| ||||||||| || || ||    
T  44803670 ctacatttcattaaatgtttttaaaattctcacattttatctccgttatcaaaattagtccatgctgatcattttctaacggaatgttgatgtggcaatt 44803571  T
Q  175 agtgagtcacaattattttaggattaaatatattttt-ggt---tatattttgcatgactttgaagaataatc 243  Q
    | |||||| |||||||||| || |||||||| ||||| |||   || ||||||| ||||||||||||||||||    
T  44803570 actgagtcccaattatttttgggttaaatatgttttttggtccctacattttgcgtgactttgaagaataatc 44803498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 75 - 240
Target Start/End: Complemental strand, 22948916 - 22948748
Alignment:
Q  75 ctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtt 174  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||  |  ||||||| || ||||| ||| ||||| || |||||    
T  22948916 ctacatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtctctattgttaatgctctaacggaatattgatgtggcagtt 22948817  T
Q  175 agtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    |||| ||| |||||||||| || |||||||| |||||  |   || |||||||||||||||||||||||    
T  22948816 agtgggtcccaattattttggggttaaatatgttttttatccctacattttgcatgactttgaagaata 22948748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 32092276 - 32092448
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||| ||||||||||||||||||||||||||||| ||||| | |  | ||||||||||||||  || |||||||||| ||||| |||  |||| || |    
T  32092276 gtccctgcatttcattaaatgtttttaaaatcctcacattttgtgtttgttatcaaaattagtctttgttgttaattctataacggaatactgatgtggc 32092375  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    |||||||| ||| |||||||||||||||||||||| ||| ||||   |||||||||| |||||||||||||||    
T  32092376 agttagtgggtcccaattattttaggattaaatatgtttgtggtccctatattttgcgtgactttgaagaata 32092448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 76 - 243
Target Start/End: Original strand, 11974717 - 11974887
Alignment:
Q  76 tacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtta 175  Q
    ||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||  || |||||||||| ||||| |||| | || || ||||||    
T  11974717 tacatttcattaaatgtttttaaaatcctcacattttatcttcgttatcaaaattagtctttgttgttaattctctaacggaatgcttatgtggcagtta 11974816  T
Q  176 gtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaataatc 243  Q
    ||  ||| ||||||||||||| |||||||| ||||||||   || ||||||  |||| |||||||||||||    
T  11974817 gtcggtcccaattattttagggttaaatatgtttttggtctctacattttgtgtgacattgaagaataatc 11974887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 92 - 214
Target Start/End: Original strand, 49053550 - 49053671
Alignment:
Q  92 tttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtgagtcacaattatt 191  Q
    |||||||||| |||||||||||||| || |||||||||||||| ||| |||||||||| ||||| |||| |||| ||| | |||||||||| ||||||||    
T  49053550 tttttaaaattctcatattttatcttcgttatcaaaattagtc-atgttgttaattctctaacggaatgctgatgtgatatttagtgagtcccaattatt 49053648  T
Q  192 ttaggattaaatatatttttggt 214  Q
    ||||| |||||||||||||||||    
T  49053649 ttagggttaaatatatttttggt 49053671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 18152804 - 18152947
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    ||||||||||||  ||||||||| |||||||||||| |||||||||||| ||||||||||||    || |||||||||| ||||| |||| |||| ||||    
T  18152804 gtccctacattttgttaaatgttcttaaaatcctcacattttatctccgttatcaaaattagcttctgttgttaattctctaacggaatgctgatgtgac 18152903  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt 214  Q
    ||||||||  || ||||||||||| | |||||||| ||||||||    
T  18152904 agttagtggatctcaattattttaaggttaaatatgtttttggt 18152947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 86 - 240
Target Start/End: Original strand, 23548670 - 23548827
Alignment:
Q  86 taaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtgagtcaca 185  Q
    |||||||||||||||| |||| |||||||||| | ||||||||||||||  || |||||||||| ||||| |||| |||| || ||||||| | ||| ||    
T  23548670 taaatgtttttaaaatactcacattttatctctgttatcaaaattagtctttgttgttaattctctaacggaatgctgatgtggcagttagcgggtccca 23548769  T
Q  186 attattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    ||||||||||| |||||||| ||||||||   || ||||||| ||||| |||||||||    
T  23548770 attattttagggttaaatatgtttttggtttctacattttgcgtgactctgaagaata 23548827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 214
Target Start/End: Complemental strand, 20544352 - 20544210
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||| |||||||||||||||||||||||||| |||| ||||||||| || ||||||||| ||||  |||| |||||||| ||||| ||||||||| || |    
T  20544352 gtccttacatttcattaaatgtttttaaaat-ctcacattttatcttcgttatcaaaatcagtcgttgctattaattctctaacgtaatgttgatgtggc 20544254  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt 214  Q
    ||||||||  || ||||| ||||| | |||||||| ||||||||    
T  20544253 agttagtggatcccaatttttttatggttaaatatgtttttggt 20544210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 44803382 - 44803481
Alignment:
Q  79 atttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtg 178  Q
    |||| ||||||| ||||||||||||| |||||||||||| ||||||||||||||||  || |||||||||| ||||||||||||||| |||||| |||||    
T  44803382 attttattaaatatttttaaaatccttatattttatctctgctatcaaaattagtctctgttgttaattctctaacgaaatgttgatgtgacagctagtg 44803481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 32092572 - 32092508
Alignment:
Q  70 cgtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtc 134  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  32092572 cgtccctacatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtc 32092508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 214
Target Start/End: Complemental strand, 49053922 - 49053779
Alignment:
Q  72 tccctacatttcattaaatgtttttaaaatcctcatattttatctc-cgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||||||| ||||||||||||||||  |||||| |  |  |||||||||||||| ||||| ||||| || ||||| ||||||||| || |    
T  49053922 tccctacatttcattaaaagtttttaaaatcctcacgttttatttttcattatcaaaattagtctatgctattaatgctctaacggaatgttgatgtggc 49053823  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt 214  Q
    | |||||| ||| ||||||||||| | |||||||| ||||||||    
T  49053822 aattagtgggtcccaattattttatggttaaatatgtttttggt 49053779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 192
Target Start/End: Complemental strand, 10466813 - 10466700
Alignment:
Q  79 atttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtg 178  Q
    |||| ||||||||||||||||||| ||| |||||||||||  |||||||||||||  ||||| |||||||| ||||| ||||||||| |||||||||  |    
T  10466813 attttattaaatgtttttaaaatcgtcacattttatctccattatcaaaattagtttatgctattaattctctaacggaatgttgatgtgacagttaacg 10466714  T
Q  179 agtcacaattattt 192  Q
     ||| |||||||||    
T  10466713 ggtctcaattattt 10466700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 79 - 214
Target Start/End: Complemental strand, 23549041 - 23548906
Alignment:
Q  79 atttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtg 178  Q
    |||||||||||| ||||| ||||||||| ||||||| |||| ||||||||||||||  ||  ||||||  |||| || |||| |||| || |||||| ||    
T  23549041 atttcattaaatctttttgaaatcctcaaattttatttccgttatcaaaattagtcactggcgttaatattttagcggaatgctgatgtggcagttaatg 23548942  T
Q  179 agtcacaattattttaggattaaatatatttttggt 214  Q
     ||| ||||||||||| | |||||||||||||||||    
T  23548941 ggtcccaattattttaaggttaaatatatttttggt 23548906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 28852742 - 28852832
Alignment:
Q  72 tccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgtt 162  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||| |  || |||||||||| ||| | ||||||    
T  28852742 tccctacatttcattaaatgtttttaaaatcctcacattttatccccgttatcaaaattagcctctgttgttaattctctaagggaatgtt 28852832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 42750160 - 42750096
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtcc 135  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||| ||| |||||||||||    
T  42750160 gtccctacatttcattaaacgtttttaaaatcctcacattttatctccgttattaaaattagtcc 42750096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 11975092 - 11975027
Alignment:
Q  84 attaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattct 149  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||||||||||  || ||||||||||    
T  11975092 attaaatgtttttaaaatcctcacattttatttccgttatcaaaattagtctctgttgttaattct 11975027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 28854726 - 28854785
Alignment:
Q  72 tccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaatta 131  Q
    ||||||||||| ||||||||||||||||||||||| ||||||| || | |||||||||||    
T  28854726 tccctacattttattaaatgtttttaaaatcctcacattttatttcagttatcaaaatta 28854785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 12908430 - 12908477
Alignment:
Q  72 tccctacatttcattaaatgtttttaaaatcctcatattttatctccg 119  Q
    ||||||||||| | ||||||||||||||||||||| ||||||||||||    
T  12908430 tccctacatttaactaaatgtttttaaaatcctcacattttatctccg 12908477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 6621157 - 6621113
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatct 116  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||    
T  6621157 gtccctacatttcattaaatg-ttttaaaatcctcacattttatct 6621113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 32092227 - 32092260
Alignment:
Q  38 gggttaaatatgtttttagtccttacattttgcg 71  Q
    ||||||||||||||||||||||||||||||||||    
T  32092227 gggttaaatatgtttttagtccttacattttgcg 32092260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 16755667 - 16755627
Alignment:
Q  79 atttcattaaatgtttttaaaatcctcatattttatctccg 119  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  16755667 atttcattaaatatttttaaaatcctcatattttttctccg 16755627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 27310095 - 27310127
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||||||||||||||||||||||    
T  27310095 gtccctacatttcattaaatgtttttaaaatcc 27310127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 17075216 - 17075251
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgcg 71  Q
    ||||||||||||||||||||||||||| ||||||||    
T  17075216 tagggttaaatatgtttttagtccttatattttgcg 17075251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 18443701 - 18443666
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgcg 71  Q
    ||||||||||||||||||| ||||||||||||||||    
T  18443701 tagggttaaatatgtttttggtccttacattttgcg 18443666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 27311090 - 27311019
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgt 142  Q
    ||||||||||||||||||||||||||||||| |  | ||||| || ||| ||  |||||| |||||||||||    
T  27311090 gtccctacatttcattaaatgtttttaaaattcctacattttttcaccgttaataaaattggtccatgctgt 27311019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 71
Target Start/End: Complemental strand, 44803721 - 44803690
Alignment:
Q  40 gttaaatatgtttttagtccttacattttgcg 71  Q
    ||||||||||||||||||||||||||||||||    
T  44803721 gttaaatatgtttttagtccttacattttgcg 44803690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 17075709 - 17075675
Alignment:
Q  37 agggttaaatatgtttttagtccttacattttgcg 71  Q
    |||||||||||| ||||||||||||||||||||||    
T  17075709 agggttaaatatctttttagtccttacattttgcg 17075675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 71
Target Start/End: Original strand, 30938597 - 30938627
Alignment:
Q  41 ttaaatatgtttttagtccttacattttgcg 71  Q
    |||||||||||||||||||||||||||||||    
T  30938597 ttaaatatgtttttagtccttacattttgcg 30938627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 10466872 - 10466835
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgcgtc 73  Q
    |||||||||||||||||||| || ||||||||||||||    
T  10466872 tagggttaaatatgtttttaatctttacattttgcgtc 10466835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 11992802 - 11992875
Alignment:
Q  121 tatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtgagtcacaattatttta 194  Q
    ||||||||||| ||| ||||||||||||| |||   |||| |||| ||||||||| |||| | |||||||||||    
T  11992802 tatcaaaattaatccctgctgttaattctctaatagaatgctgatgtgacagttaatgagacccaattatttta 11992875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 12933154 - 12933121
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttg 69  Q
    |||||||||||||||||||||||| |||||||||    
T  12933154 tagggttaaatatgtttttagtccctacattttg 12933121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 18443651 - 18443610
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatatttt 112  Q
    |||||||||||||| ||||||||||||||||||  |||||||    
T  18443651 gtccctacatttcaataaatgtttttaaaatccctatatttt 18443610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 23548053 - 23548086
Alignment:
Q  38 gggttaaatatgtttttagtccttacattttgcg 71  Q
    ||||||||||||||||||||||||| ||||||||    
T  23548053 gggttaaatatgtttttagtccttatattttgcg 23548086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 30939606 - 30939574
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||||||||| ||||||||||||    
T  30939606 gtccctacatttcattaaatatttttaaaatcc 30939574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 19895448 - 19895620
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||| ||||||| ||||||||||||||||| ||||| |||||||||||| |||||||||||||| || ||||||||||||||||| |||| |||| || |    
T  19895448 gtccatacatttaattaaatgtttttaaaaccctcacattttatctccgttatcaaaattagtctatactgttaattctttaacggaatgctgatgtggc 19895547  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    ||||| |||||| ||||||||||| | |||||||| ||||||||   |||||||||| |||||||||| ||||    
T  19895548 agttaatgagtctcaattattttatggttaaatatgtttttggtctctatattttgcgtgactttgaaaaata 19895620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 75 - 240
Target Start/End: Complemental strand, 19895838 - 19895670
Alignment:
Q  75 ctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtt 174  Q
    |||||||| |||||||||||||||||| |||||||||||||| || ||||||||||||||  || |||||||||| ||||  ||||||||| ||||||||    
T  19895838 ctacattttattaaatgtttttaaaattctcatattttatcttcgttatcaaaattagtctttgttgttaattctctaacagaatgttgatgtgacagtt 19895739  T
Q  175 agtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    |||| ||||||||||||||||  ||||||||||||||| |   || |||||||| ||||||||||||||    
T  19895738 agtgtgtcacaattattttagagttaaatatatttttgatccctacattttgcaagactttgaagaata 19895670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 83 - 214
Target Start/End: Complemental strand, 4288470 - 4288338
Alignment:
Q  83 cattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtgagtc 182  Q
    |||||||||||||||||||||||| ||||||| | || ||||||||||| ||||||||||||||||||||||| ||||||||| || ||||||||| |||    
T  4288470 cattaaatgtttttaaaatcctcacattttatattcgttatcaaaattaatccatgctgttaattctttaacggaatgttgatgtgtcagttagtgggtc 4288371  T
Q  183 acaatta-ttttaggattaaatatatttttggt 214  Q
    ||||||| |||||||||||||||| ||||||||    
T  4288370 acaattatttttaggattaaatatgtttttggt 4288338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 71 - 243
Target Start/End: Complemental strand, 5683603 - 5683428
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||  ||||||||||| | ||||| |||||| || ||||    
T  5683603 gtccctacatttcattaaatatttttaaaatcctcgtattttatctccggtatcaaaattagtcactgctgttaattttctaacggaatgttaatgtgac 5683504  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaataatc 243  Q
    ||||||||  |  ||||||||||| |||||||||| ||||| ||   || ||||| | ||||||||||||||||||    
T  5683503 agttagtggataccaattattttaagattaaatatgtttttagtccctacattttacgtgactttgaagaataatc 5683428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 71 - 243
Target Start/End: Complemental strand, 18180320 - 18180146
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||  || |||||||||| ||||| |||| ||||||| |    
T  18180320 gtccatacattttattaaatgtttttaaaatcctcatattttatctccgttatcaaaattagtcagtggtgttaattctctaacggaatgctgatatgtc 18180221  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttgg---ttatattttgcatgactttgaagaataatc 243  Q
    ||||| |||| | ||||||||||||| || ||||| ||||| |   ||| ||||||| ||||||||||||||||||    
T  18180220 agttaatgagccccaattattttagggtt-aatatgtttttagtccttacattttgcgtgactttgaagaataatc 18180146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 5683209 - 5683352
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||| |  ||||||||||||||| |||||||| |||| ||||  |||| |||||||||    
T  5683209 gtccctacatttcattaaatgtatttaaaatcctcacattttatcttcattatcaaaattagtccctgctgttatttctctaacagaatgctgatatgac 5683308  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt 214  Q
    |||||||| ||| |||||||||||   ||||||||||| |||||    
T  5683309 agttagtgggtcccaattattttaatgttaaatatattattggt 5683352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 74 - 211
Target Start/End: Complemental strand, 48155318 - 48155181
Alignment:
Q  74 cctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagt 173  Q
    |||| |||||||||||||||||||||||| ||| |||||||||  | ||||||||||||||| || |||||||||||||||| |||| |||| |||||||    
T  48155318 cctatatttcattaaatgtttttaaaatcttcacattttatctatgttatcaaaattagtccttgttgttaattctttaacggaatgctgatttgacagt 48155219  T
Q  174 tagtgagtcacaattattttaggattaaatatattttt 211  Q
    |||||||||  |||| ||||||| |||||||| |||||    
T  48155218 tagtgagtcttaattgttttagggttaaatatgttttt 48155181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 86 - 211
Target Start/End: Complemental strand, 47541851 - 47541726
Alignment:
Q  86 taaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtgagtcaca 185  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||| || |||||||| || |||| ||||||||| || | ||| ||| ||| ||    
T  47541851 taaatgtttttaaaatcctcacattttatctccgttatcaaaattagtccttgttgttaattattaaacggaatgttgatgtggcggttggtgggtccca 47541752  T
Q  186 attattttaggattaaatatattttt 211  Q
    |||||||||||||||||||| |||||    
T  47541751 attattttaggattaaatatgttttt 47541726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 214
Target Start/End: Complemental strand, 3591379 - 3591236
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||| ||||||| ||||||||||||||||||||||| |||||||||||  ||| ||||||||||| |||||| |||| | ||||| |||  |||| || |    
T  3591379 gtccatacattttattaaatgtttttaaaatcctcacattttatctccattataaaaattagtccctgctgtaaattatctaacggaatcctgatgtggc 3591280  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt 214  Q
    |||||||| ||| ||||||||||| | |||||||| ||||||||    
T  3591279 agttagtgggtcccaattattttaaggttaaatatgtttttggt 3591236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 182
Target Start/End: Complemental strand, 6751395 - 6751284
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||| ||||||||||||||| ||||||||||||||| |||||||||  | ||||||||||||||  ||||||||||||| ||| | ||||||||| ||||    
T  6751395 gtccttacatttcattaaatttttttaaaatcctcacattttatctttgttatcaaaattagtctctgctgttaattctctaatggaatgttgatgtgac 6751296  T
Q  171 agttagtgagtc 182  Q
    ||||||||||||    
T  6751295 agttagtgagtc 6751284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 240
Target Start/End: Complemental strand, 31436417 - 31436253
Alignment:
Q  79 atttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtg 178  Q
    |||| ||||||||||||||||||  ||| |||||||||||| ||||||||||||||  ||||||||||||| ||||| |||| |||| ||||||||| ||    
T  31436417 attttattaaatgtttttaaaattatcacattttatctccgttatcaaaattagtctctgctgttaattctctaacggaatgatgatgtgacagttaatg 31436318  T
Q  179 agtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
     ||| ||||||||||||  || ||||| |||| |||   || ||||| | |||||||||||||||    
T  31436317 ggtcccaattattttagagttcaatatgttttcggtccctacattttacgtgactttgaagaata 31436253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 79 - 235
Target Start/End: Original strand, 18179935 - 18180094
Alignment:
Q  79 atttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtg 178  Q
    |||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||  | ||| ||||| | ||||| |||| |||| ||||| ||||||    
T  18179935 atttcattaattgtttttaaaatcctcacattttatctccgttatcaaaattagtctctactgctaattttctaacggaatgctgatgtgacaattagtg 18180034  T
Q  179 agtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaa 235  Q
     ||| ||||||||||| | |||||||| ||||| ||   || ||||||| ||||||||||    
T  18180035 ggtcccaattattttaaggttaaatatgtttttagtcactacattttgcgtgactttgaa 18180094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 75 - 211
Target Start/End: Original strand, 9880536 - 9880672
Alignment:
Q  75 ctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtt 174  Q
    |||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||  || |||||||||| |     |||| |||| || | |||    
T  9880536 ctacatttcattaaatgtttttaaaatcctcacattttatcttcgttatcaaaattagtcactgttgttaattctatgtatgaatgctgatgtggcggtt 9880635  T
Q  175 agtgagtcacaattattttaggattaaatatattttt 211  Q
    |||||||| ||||||||||||| |||||||| |||||    
T  9880636 agtgagtctcaattattttagggttaaatatgttttt 9880672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 79 - 240
Target Start/End: Original strand, 6751103 - 6751268
Alignment:
Q  79 atttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtg 178  Q
    ||||||||||||||||| |||||| ||  |||||||||||| |||||||||||||||  | |||||||||| ||||  |||| ||||||| |||||||||    
T  6751103 atttcattaaatgttttaaaaatcatcgcattttatctccgttatcaaaattagtccccgatgttaattctctaacagaatgctgatatggcagttagtg 6751202  T
Q  179 agtcacaattattttaggattaaatat-atttttggt---tatattttgcatgactttgaagaata 240  Q
     ||| ||||||| ||| | ||||||||  ||||||||   |||||||||| | |||||||||||||    
T  6751203 ggtcccaattatattaaggttaaatatgttttttggtctctatattttgcgtaactttgaagaata 6751268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 9880824 - 9880721
Alignment:
Q  79 atttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtg 178  Q
    |||| |||||||||||||||||| |||| |||||||||| | ||||||||||||||| ||||||||||||| ||||| |||| |||| | ||||||||||    
T  9880824 attttattaaatgtttttaaaattctcacattttatctctgttatcaaaattagtccctgctgttaattctctaacggaatgctgatgtaacagttagtg 9880725  T
Q  179 agtc 182  Q
    ||||    
T  9880724 agtc 9880721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 178
Target Start/End: Original strand, 48155021 - 48155128
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||  |||| |||| ||| ||||| | ||||||| ||||    
T  48155021 gtccttacattttattaaatgtttttaaaatcctcatattttatctccgatatcaaaattaatctctgctcttaagtctgtaacggattgttgatgtgac 48155120  T
Q  171 agttagtg 178  Q
    ||||||||    
T  48155121 agttagtg 48155128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 79 - 214
Target Start/End: Complemental strand, 50359473 - 50359339
Alignment:
Q  79 atttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtg 178  Q
    |||||||||||||||||||||||||||| |||||||||| | ||||||||||||||  |||| |||  ||||||||| |||| |||| || |||||| ||    
T  50359473 atttcattaaatgtttttaaaatcctcacattttatctctgttatcaaaattagtctctgcttttatgtctttaacggaatgctgatgtggcagtta-tg 50359375  T
Q  179 agtcacaattattttaggattaaatatatttttggt 214  Q
     ||| ||||||||||| | |||||||| ||||||||    
T  50359374 ggtcccaattattttaaggttaaatatgtttttggt 50359339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 75 - 240
Target Start/End: Original strand, 5172797 - 5172964
Alignment:
Q  75 ctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtt 174  Q
    |||||||||||||||||||||||||||||| | ||||||||| || ||||||| ||||||| || |||||||||| |||   ||||||||| ||  ||||    
T  5172797 ctacatttcattaaatgtttttaaaatccttacattttatctacgttatcaaatttagtccttgttgttaattctctaatagaatgttgatgtg-tagtt 5172895  T
Q  175 agtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    |||||||| ||||||||||| | || ||||| |||||| |   || ||||||| ||||||| |||||||    
T  5172896 agtgagtcccaattattttaaggttcaatatgtttttgattcctacattttgcgtgactttaaagaata 5172964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 192
Target Start/End: Original strand, 50359173 - 50359293
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||| |||| |||||||||||| |  ||||||||||||| ||||| ||||||||| || |    
T  50359173 gtccctacatttcattaaatgttttttaaatcttcacattttatttccgttatcaaaattag-ctctgctgttaattctctaacggaatgttgatgtggc 50359271  T
Q  171 agttagtgagtcacaattattt 192  Q
    |||| ||| ||| |||||||||    
T  50359272 agttcgtgggtcccaattattt 50359293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 47541566 - 47541672
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    ||||||| |||||||||||||||||||||||||||| ||||||| | |  ||||||||||| ||| || |||||||||| ||||| |||| |||| || |    
T  47541566 gtccctatatttcattaaatgtttttaaaatcctcacattttatattcattatcaaaattaatccctgttgttaattctctaacggaatgctgatgtggc 47541665  T
Q  171 agttagt 177  Q
    |||||||    
T  47541666 agttagt 47541672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 19976225 - 19976335
Alignment:
Q  84 attaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtgagtca 183  Q
    |||||||||||||||||||| || ||||||||||   ||||||||||| ||| || |||||||| | |||| |||| ||||| |||| |||| || |||     
T  19976225 attaaatgtttttaaaatccccacattttatctctattatcaaaattaatccttgttgttaattatctaacaaaatattgatgtgacggttaatgggtcg 19976324  T
Q  184 caattatttta 194  Q
    |||||||||||    
T  19976325 caattatttta 19976335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 147
Target Start/End: Complemental strand, 42723284 - 42723221
Alignment:
Q  84 attaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaatt 147  Q
    ||||||||||||||||||||||| ||||||| |||| || ||||||||||  ||| ||||||||    
T  42723284 attaaatgtttttaaaatcctcacattttatatccgttagcaaaattagtttatgttgttaatt 42723221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 9880482 - 9880515
Alignment:
Q  37 agggttaaatatgtttttagtccttacattttgc 70  Q
    ||||||||||||||||||||||||||||||||||    
T  9880482 agggttaaatatgtttttagtccttacattttgc 9880515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 1501023 - 1500991
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||||||||||||||||||||||    
T  1501023 gtccctacatttcattaaatgtttttaaaatcc 1500991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 19895398 - 19895429
Alignment:
Q  37 agggttaaatatgtttttagtccttacatttt 68  Q
    ||||||||||||||||||||||||||||||||    
T  19895398 agggttaaatatgtttttagtccttacatttt 19895429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 5172743 - 5172777
Alignment:
Q  37 agggttaaatatgtttttagtccttacattttgcg 71  Q
    ||||||||||||||||||||| |||||||||||||    
T  5172743 agggttaaatatgtttttagttcttacattttgcg 5172777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 1500107 - 1500148
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatatttt 112  Q
    |||||||||||||||| ||||||||||||||||  |||||||    
T  1500107 gtccctacatttcattgaatgtttttaaaatccctatatttt 1500148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 3591428 - 3591395
Alignment:
Q  38 gggttaaatatgtttttagtccttacattttgcg 71  Q
    ||||||||||| ||||||||||||||||||||||    
T  3591428 gggttaaatatatttttagtccttacattttgcg 3591395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 4288525 - 4288488
Alignment:
Q  39 ggttaaatatgtttttagtccttacattttgcgtccct 76  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  4288525 ggttaaatatgtttttagtccttatattttgcgcccct 4288488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 18179877 - 18179910
Alignment:
Q  37 agggttaaatatgtttttagtccttacattttgc 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  18179877 agggttaaacatgtttttagtccttacattttgc 18179910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 31436475 - 31436438
Alignment:
Q  37 agggttaaatatgtttttagtccttacattttgcgtcc 74  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  31436475 agggttaaatatgattttagtccttacattttgtgtcc 31436438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 6751446 - 6751414
Alignment:
Q  37 agggttaaatatgtttttagtccttacattttg 69  Q
    |||||||||||||||||||||| ||||||||||    
T  6751446 agggttaaatatgtttttagtcattacattttg 6751414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 8997388 - 8997420
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  8997388 gtccctacatttcaataaatgtttttaaaatcc 8997420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 12869696 - 12869664
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  12869696 gtccctacatttcaataaatgtttttaaaatcc 12869664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 18180191 - 18180163
Alignment:
Q  44 aatatgtttttagtccttacattttgcgt 72  Q
    |||||||||||||||||||||||||||||    
T  18180191 aatatgtttttagtccttacattttgcgt 18180163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 32266530 - 32266562
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  32266530 gtccctacatttcaataaatgtttttaaaatcc 32266562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 32596407 - 32596375
Alignment:
Q  37 agggttaaatatgtttttagtccttacattttg 69  Q
    ||||||||||||| |||||||||||||||||||    
T  32596407 agggttaaatatgattttagtccttacattttg 32596375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 40124073 - 40124105
Alignment:
Q  36 tagggttaaatatgtttttagtccttacatttt 68  Q
    ||||||||||||||||||| |||||||||||||    
T  40124073 tagggttaaatatgtttttggtccttacatttt 40124105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 40124123 - 40124155
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  40124123 gtccctacatttcaataaatgtttttaaaatcc 40124155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 45230603 - 45230555
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccg 119  Q
    |||||||||||||| | ||||||||||||||||  ||||||| ||||||    
T  45230603 gtccctacatttcaatgaatgtttttaaaatccctatattttttctccg 45230555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 47410470 - 47410502
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  47410470 gtccctacatttcaataaatgtttttaaaatcc 47410502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 47410896 - 47410864
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  47410896 gtccctacatttcaataaatgtttttaaaatcc 47410864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 47542109 - 47542077
Alignment:
Q  39 ggttaaatatgtttttagtccttacattttgcg 71  Q
    |||||||||||||||||||||||| ||||||||    
T  47542109 ggttaaatatgtttttagtccttatattttgcg 47542077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 80 - 240
Target Start/End: Original strand, 21005779 - 21005942
Alignment:
Q  80 tttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtga 179  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||  | ||||||||||| ||||||||||||||| || |||||||||     
T  21005779 tttcattaaatttttttaaaatcttcatattttatctccgttatcaaaattattctttcctgttaattctctaacgaaatgttgatgtggcagttagtgg 21005878  T
Q  180 gtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
     || ||||||||||||| |||||||||||||||||   || ||||||||| |||||||||||||    
T  21005879 atcccaattattttagggttaaatatatttttggtccctacattttgcataactttgaagaata 21005942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 13315250 - 13315422
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||| | |||||||||||| |  | ||||||||||| ||||| ||||||||| || |    
T  13315250 gtccctacatttcattaaatgtttttaaaatcatcacattttatctctgttatcaaaattagccattcctgttaattctctaacggaatgttgatgtggc 13315349  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    |||||||| ||| ||||||||||||| |||||||| ||||| ||   || ||||||| |||||||||||||||    
T  13315350 agttagtgggtcccaattattttagggttaaatatgtttttagtccctacattttgcgtgactttgaagaata 13315422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 44024273 - 44024445
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||| |||||||||  |||||||||||||||| ||| |||||||| ||| |||||||||||||| ||| |||||||||| ||||| ||||||||| ||||    
T  44024273 gtccatacatttcaccaaatgtttttaaaatcatcacattttatccccgttatcaaaattagtcaatgttgttaattctctaacggaatgttgatgtgac 44024372  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttgg---ttatattttgcatgactttgaagaata 240  Q
    |||||||||||| ||||||||||| | |||||||| |||||||   ||| ||||||| |||||||||| ||||    
T  44024373 agttagtgagtctcaattattttaaggttaaatatgtttttggtccttacattttgcgtgactttgaaaaata 44024445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 74 - 235
Target Start/End: Original strand, 6297513 - 6297677
Alignment:
Q  74 cctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagt 173  Q
    ||||||||||||||||||||||||||||||||| ||||| |||| | ||||||||||||||| |||||||||||||  |||| |||| |||| || ||||    
T  6297513 cctacatttcattaaatgtttttaaaatcctcacattttctctctgttatcaaaattagtccttgctgttaattctccaacggaatgctgatgtggcagt 6297612  T
Q  174 tagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaa 235  Q
    ||||| ||| ||||||||||| | |||||||| ||||| ||   || ||||||| ||||||||||    
T  6297613 tagtgggtcccaattattttaaggttaaatatgttttttgtctgtacattttgcgtgactttgaa 6297677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 71 - 214
Target Start/End: Complemental strand, 21006164 - 21006021
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||  ||| ||||||||||||| ||| |||||| |||| || |    
T  21006164 gtccctacattttattaaatgtttttaaaatcctcacattttatctccgttatcaaaattgatccctgctgttaattctctaatgaaatgctgatgtggc 21006065  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt 214  Q
    ||||||||  ||  |||||||||| | |||||||| ||||||||    
T  21006064 agttagtggatccaaattattttaaggttaaatatgtttttggt 21006021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 6297904 - 6297732
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |||| ||||| |||   ||||||||| ||      
T  6297904 gtccttacatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtccttgttgttgattctctaatagaatgttgatgtggt 6297805  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    ||||| || ||| ||||||||||| | |||| ||| ||||||||   || ||||||| |||||||||||||||    
T  6297804 agttactgggtcccaattattttaaggttaattatgtttttggtccctacattttgcgtgactttgaagaata 6297732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 6298077 - 6297905
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||| ||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||| |  |||||||||| ||||| |||| |||| || |    
T  6298077 gtccttacatttcattaaatgtttttaaaatcctcacattttatttccgttatcaaaattagtccctattgttaattctctaacggaatgctgatgtggc 6297978  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    ||||| || ||| |||||||||||||  ||| ||| ||||| ||   || ||||||| |||||||||||||||    
T  6297977 agttaatgggtcccaattattttagggataattatgtttttcgtccctacattttgcgtgactttgaagaata 6297905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 74 - 211
Target Start/End: Complemental strand, 16662510 - 16662374
Alignment:
Q  74 cctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagt 173  Q
    |||||||||||||||||||||||||||| |||||| |||||||||| | ||||||||| ||| || |||||||||| ||||| ||||||||| || | ||    
T  16662510 cctacatttcattaaatgtttttaaaattctcata-tttatctccgttctcaaaattaatccctgttgttaattctctaacggaatgttgatgtggcggt 16662412  T
Q  174 tagtgagtcacaattattttaggattaaatatattttt 211  Q
    ||||| ||| ||||||||| ||| |||||||| |||||    
T  16662411 tagtgggtcccaattatttcagggttaaatatgttttt 16662374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 211
Target Start/End: Complemental strand, 9800377 - 9800245
Alignment:
Q  79 atttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtg 178  Q
    |||||||||||||||||||||||||| | ||||||||| || |||||||||||||  |||||||||||||| ||||  ||||||||| ||  | |||| |    
T  9800377 atttcattaaatgtttttaaaatccttacattttatcttcgttatcaaaattagtttatgctgttaattctctaacagaatgttgatgtggtaattagcg 9800278  T
Q  179 agtcacaattattttaggattaaatatattttt 211  Q
    |||| ||||||||||||| |||||||| |||||    
T  9800277 agtcccaattattttagggttaaatatgttttt 9800245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 178
Target Start/End: Original strand, 16662216 - 16662323
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||| | ||| ||||||||||| | ||||||||||| |||||||||| |||| || |    
T  16662216 gtccctacatttcattaaatgtttttaaaattctcacattttatctctgttattaaaattagtccctactgttaattctctaacgaaatgctgatgtggc 16662315  T
Q  171 agttagtg 178  Q
    ||||||||    
T  16662316 agttagtg 16662323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 10047527 - 10047610
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacg 155  Q
    ||||||||||| ||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||| |||||    
T  10047527 gtccctacatt-cattaaatgtttttaaaattctcacattttatctccgttatcaaaattagtccatgctgttaattctctaacg 10047610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 235
Target Start/End: Complemental strand, 17915544 - 17915382
Alignment:
Q  76 tacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtta 175  Q
    ||||||| ||||||||||||| ||||||||| |||||||||| | ||||||||||||||  ||||||||||||||||||  ||| ||||| || ||||||    
T  17915544 tacattttattaaatgttttttaaatcctcacattttatctctgttatcaaaattagtctttgctgttaattctttaacagaatattgatgtggcagtta 17915445  T
Q  176 gtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaa 235  Q
    ||| |||  ||||||||||   |||||| | ||||||||   || ||||||| ||||||||||    
T  17915444 gtgggtcctaattattttaaagttaaatctgtttttggttcctacattttgcgtgactttgaa 17915382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 240
Target Start/End: Complemental strand, 10047909 - 10047748
Alignment:
Q  82 tcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtgagt 181  Q
    ||||||||| ||||||||||  |||||||||||||||| ||||||||||||||  || ||| ||||||  |||| ||||||| | |  ||||||||  ||    
T  10047909 tcattaaatatttttaaaattttcatattttatctccgttatcaaaattagtctttgatgtcaattctacaacggaatgttgttgtagcagttagtaggt 10047810  T
Q  182 cacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    | ||||||||||||| |||||||| ||||||||   |||||||| | |||||||||||||||    
T  10047809 cccaattattttaggtttaaatatgtttttggtccctatatttttcgtgactttgaagaata 10047748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 178
Target Start/End: Complemental strand, 26997911 - 26997804
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||| ||||||||||||| | ||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||| ||||| |||| |||| ||      
T  26997911 gtccatacatttcattaattatttttaaaatcctcacattttatctccgttatcaaaattagtccctgctgttaattctctaacggaatgctgatgtggt 26997812  T
Q  171 agttagtg 178  Q
    ||||||||    
T  26997811 agttagtg 26997804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 9800092 - 9800194
Alignment:
Q  76 tacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtta 175  Q
    ||||||| ||||||||||||||||||||||| |||| ||||||| ||||||||||||||  ||||||||||||| ||||| |||| |||| || ||||||    
T  9800092 tacattttattaaatgtttttaaaatcctcacatttcatctccgttatcaaaattagtctttgctgttaattctctaacggaatgctgatgtggcagtta 9800191  T
Q  176 gtg 178  Q
    |||    
T  9800192 gtg 9800194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 39234889 - 39234997
Alignment:
Q  76 tacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtta 175  Q
    ||||||| ||||||| |||| ||||| |||| |||||||||| | |||||||||||||| |||||||||||||| ||||| |||| |||| |||||||||    
T  39234889 tacattttattaaatattttaaaaattctcacattttatctcagttatcaaaattagtcaatgctgttaattctctaacggaatgctgatgtgacagtta 39234988  T
Q  176 gtgagtcac 184  Q
    || ||||||    
T  39234989 gtaagtcac 39234997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 214
Target Start/End: Complemental strand, 11089331 - 11089194
Alignment:
Q  76 tacatttcattaaatgtttttaaaatcctcatatttt-atctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtt 174  Q
    |||||||| |||||| ||||||||||||||||||||| | ||| | ||| ||||||||| | ||||||||||| | ||||||||||||||| ||||||||    
T  11089331 tacatttcgttaaatatttttaaaatcctcatatttttagctctgttattaaaattagttc-tgctgttaattatctaacgaaatgttgatgtgacagtt 11089233  T
Q  175 agtgagtcacaattattttaggattaaatatatttttggt 214  Q
    ||||  || ||||||||||| | |||||||| ||||||||    
T  11089232 agtggatcccaattattttaag-ttaaatatgtttttggt 11089194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 26243429 - 26243330
Alignment:
Q  79 atttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtg 178  Q
    |||||||||||||||||||||||||||| |||||||||||  |||||||||| ||||| | |||||||||| |||   ||||||||| ||||||||||||    
T  26243429 atttcattaaatgtttttaaaatcctcacattttatctccattatcaaaatttgtccacggtgttaattctctaattgaatgttgatgtgacagttagtg 26243330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 160
Target Start/End: Original strand, 12489276 - 12489365
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatg 160  Q
    |||||||||||||||||||| ||||||||||||||  |||||||||  | ||||||||||||||  ||||||||||||| ||||| ||||    
T  12489276 gtccctacatttcattaaatatttttaaaatcctcgcattttatctttgttatcaaaattagtctctgctgttaattctctaacggaatg 12489365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 17914245 - 17914309
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtcc 135  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||| | |||||||||||||||    
T  17914245 gtccctacattttattaaatgtttttaaaatcctcacattttatctctgttatcaaaattagtcc 17914309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 7344893 - 7344804
Alignment:
Q  76 tacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgat 165  Q
    ||||||| |||| |||||||||||||||||||||||||| |||| ||||||||||| ||  | || |||||||| |||||||||| ||||    
T  7344893 tacattttattatatgtttttaaaatcctcatattttatgtccgttatcaaaattactcattactattaattctctaacgaaatgctgat 7344804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 237
Target Start/End: Complemental strand, 12489507 - 12489406
Alignment:
Q  140 tgttaattctttaacgaaatgttgatatgacagttagtgagtcacaattattttaggattaaatatat-ttttggt---tatattttgcatgactttgaa 235  Q
    |||||||||| ||||| |||| |||| |||||||||||||||  ||||||||||| | |||||||||| |||||||   |||||||||| ||||||||||    
T  12489507 tgttaattctctaacggaatgctgatgtgacagttagtgagtttcaattattttaaggttaaatatattttttggtcgctatattttgcgtgactttgaa 12489408  T
Q  236 ga 237  Q
    ||    
T  12489407 ga 12489406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 194
Target Start/End: Original strand, 44148625 - 44148748
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||| | |||| |||||||||||||||| |||||  ||||| |||||||| |||||| | | || |||| | |||||||||| |||| || |    
T  44148625 gtccctacattttaataaacgtttttaaaatcctcacatttttactccgttatcaaaaatagtccctaccgtcaattatctaacgaaatgatgatgtggc 44148724  T
Q  171 agttagtgagtcacaattatttta 194  Q
    |||||||| ||| |||||| ||||    
T  44148725 agttagtgggtcccaattaattta 44148748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 45369011 - 45369118
Alignment:
Q  139 ctgttaattctttaacgaaatgttgatatgacagttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaa 235  Q
    ||||||||| | ||||  |||| |||| |||||||||||||||| ||||||||||||| || ||||| ||||||||   || ||||||| ||| ||||||    
T  45369011 ctgttaattgtctaacagaatgctgatgtgacagttagtgagtcccaattattttagggttgaatatgtttttggtccgtacattttgcgtgattttgaa 45369110  T
Q  236 gaataatc 243  Q
    ||||||||    
T  45369111 gaataatc 45369118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 12489616 - 12489582
Alignment:
Q  39 ggttaaatatgtttttagtccttacattttgcgtc 73  Q
    |||||||||||||||||||||||||||||||||||    
T  12489616 ggttaaatatgtttttagtccttacattttgcgtc 12489582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 26997962 - 26997924
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgcgtcc 74  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  26997962 tagggttaaatatgtttttagttcttacattttgcgtcc 26997924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 13315201 - 13315234
Alignment:
Q  38 gggttaaatatgtttttagtccttacattttgcg 71  Q
    ||||||||||||||||||||||||||||||||||    
T  13315201 gggttaaatatgtttttagtccttacattttgcg 13315234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 13315372 - 13315408
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgcgt 72  Q
    |||||||||||||||||||||||| ||||||||||||    
T  13315372 tagggttaaatatgtttttagtccctacattttgcgt 13315408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 10047476 - 10047511
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgcg 71  Q
    |||||||||||||||||||| |||||||||||||||    
T  10047476 tagggttaaatatgtttttaatccttacattttgcg 10047511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 69
Target Start/End: Complemental strand, 17915597 - 17915566
Alignment:
Q  38 gggttaaatatgtttttagtccttacattttg 69  Q
    ||||||||||||||||||||||||||||||||    
T  17915597 gggttaaatatgtttttagtccttacattttg 17915566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 9800038 - 9800071
Alignment:
Q  38 gggttaaatatgtttttagtccttacattttgcg 71  Q
    ||||||||||||||||||||||||| ||||||||    
T  9800038 gggttaaatatgtttttagtccttagattttgcg 9800071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 71
Target Start/End: Complemental strand, 16662558 - 16662529
Alignment:
Q  42 taaatatgtttttagtccttacattttgcg 71  Q
    ||||||||||||||||||||||||||||||    
T  16662558 taaatatgtttttagtccttacattttgcg 16662529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 44024398 - 44024431
Alignment:
Q  39 ggttaaatatgtttttagtccttacattttgcgt 72  Q
    |||||||||||||||| |||||||||||||||||    
T  44024398 ggttaaatatgtttttggtccttacattttgcgt 44024431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 16662391 - 16662359
Alignment:
Q  37 agggttaaatatgtttttagtccttacattttg 69  Q
    ||||||||||||||||||||||| |||||||||    
T  16662391 agggttaaatatgtttttagtccctacattttg 16662359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 26720369 - 26720401
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||||||||| ||||||||||||    
T  26720369 gtccctacatttcattaaatatttttaaaatcc 26720401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 29917152 - 29917184
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  29917152 gtccctacatttcaataaatgtttttaaaatcc 29917184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 44803605 - 44803525
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattcttt 151  Q
    |||||||||||| | |||| ||||||||||| |||| ||||||| | |  ||||||| ||||||| ||| || ||||||||    
T  44803605 gtccctacatttaagtaaaagtttttaaaattctcacattttatattcattatcaaatttagtccttgccgtcaattcttt 44803525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 71 - 212
Target Start/End: Original strand, 44504140 - 44504281
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| ||||| |||| |||| ||||    
T  44504140 gtccctacatttcattaaatatttttaaaatcctcacattttatctccgttatcaaaattagtccatgttgttaattctctaacggaatgatgatgtgac 44504239  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttg 212  Q
    ||||||||  || ||||||||||| | |||||||| ||||||    
T  44504240 agttagtggatcccaattattttaaggttaaatatgtttttg 44504281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 9217868 - 9218011
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||  || |||||||||||||||| || |||||| || |    
T  9217868 gtccctacatttcattaaatgtttttaaaatcctcacattttatctccgttattaaaattagtcactgttgttaattctttaacggaacgttgatgtggc 9217967  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt 214  Q
    |||||||| ||| ||||||||||||  |||||||| ||||||||    
T  9217968 agttagtgggtcccaattattttagagttaaatatgtttttggt 9218011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 22814344 - 22814517
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||| |||| |||||| | ||||| ||||||||| |||     
T  22814344 gtccatacatttcattaaatgtttttaaaatcctcacattttatcttcgttatcaaaattagtccctgctattaattttctaacggaatgttgatgtgat 22814443  T
Q  171 agttagtgagtcacaattattttaggattaaatatattttt-ggt---tatattttgcatgactttgaagaata 240  Q
    ||||| || ||| ||||||||||||| |||||||| ||||| |||   || ||||||| |||||||||||||||    
T  22814444 agttattgggtcccaattattttagggttaaatatgtttttaggtccctacattttgcgtgactttgaagaata 22814517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 75 - 243
Target Start/End: Original strand, 37172133 - 37172304
Alignment:
Q  75 ctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtt 174  Q
    |||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||  ||||  ||||||  |||| ||||||||| || |||||    
T  37172133 ctacatttcattaaatgtttttaaaatcctcacagtttatctccgttatcaaaattagtcccggctgaaaattctccaacggaatgttgatgtggcagtt 37172232  T
Q  175 agtgagtcacaattattttaggattaaatatatttttgg---ttatattttgcatgactttgaagaataatc 243  Q
    ||| |||| ||||||||||| | |||||||| |||||||   ||| ||||||| |||||||||| |||||||    
T  37172233 agtaagtcccaattattttaaggttaaatatgtttttggtccttacattttgcgtgactttgaaaaataatc 37172304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 78 - 210
Target Start/End: Original strand, 13637530 - 13637662
Alignment:
Q  78 catttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagt 177  Q
    ||||||||||||| ||||||||||| ||||||||||||| || ||||||||||||||  | | ||||||||| ||||| ||||||||| || ||||||||    
T  13637530 catttcattaaatatttttaaaatcttcatattttatcttcgttatcaaaattagtctttaccgttaattctctaacggaatgttgatgtggcagttagt 13637629  T
Q  178 gagtcacaattattttaggattaaatatatttt 210  Q
    | ||| ||||||||||||| |||||||| ||||    
T  13637630 gggtcccaattattttagggttaaatatgtttt 13637662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 211
Target Start/End: Original strand, 25770369 - 25770509
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||  || ||||||||||| |||||| |||||||||| ||||| |||| |||| ||||    
T  25770369 gtccctacatttcattaaatgtttttagaatcctcacattttatcatcgttatcaaaattaatccatgttgttaattctctaacggaatgctgatgtgac 25770468  T
Q  171 agttagtgagtcacaattattttaggattaaatatattttt 211  Q
    | |||| | ||| |||||||| || | |||||||| |||||    
T  25770469 aattagcgggtcccaattattataaggttaaatatgttttt 25770509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 78 - 240
Target Start/End: Original strand, 27013464 - 27013629
Alignment:
Q  78 catttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagt 177  Q
    ||||| ||||||||||||||||||||| | |||||||||||| ||||| |||||||| ||| |||||||||| ||||| |||  |||| || ||||||||    
T  27013464 cattttattaaatgtttttaaaatccttacattttatctccgttatcacaattagtctatgttgttaattctctaacggaatactgatgtggcagttagt 27013563  T
Q  178 gagtcacaattattttaggattaaatatatttttgg---ttatattttgcatgactttgaagaata 240  Q
    | ||| |||||||||||   |||||||| |||||||   ||| ||||||| ||| |||||||||||    
T  27013564 gggtctcaattattttaaagttaaatatgtttttggtccttacattttgcgtgattttgaagaata 27013629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 38485745 - 38485887
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||| ||||||| |||| ||||||||||||||||   ||||| |||||| ||||||||||||||  ||||||||||||||||||| ||||||||| |  |    
T  38485745 gtccatacattttattatatgtttttaaaatccttgcatttt-tctccgttatcaaaattagtctttgctgttaattctttaacggaatgttgatgtagc 38485843  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt 214  Q
    ||||||||  || ||||||||||||| |||||||| ||||||||    
T  38485844 agttagtggatcccaattattttagggttaaatatgtttttggt 38485887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 178
Target Start/End: Original strand, 43933488 - 43933595
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||| || ||||||||||||||| || |||||||||| ||| | |||| |||| ||||    
T  43933488 gtccctacatttcattaaatatttttaaaatcctcacattttatcttcgttatcaaaattagtccctgttgttaattctataatggaatgctgatgtgac 43933587  T
Q  171 agttagtg 178  Q
    ||||||||    
T  43933588 agttagtg 43933595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 13637818 - 13637711
Alignment:
Q  75 ctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtt 174  Q
    |||||||||||||||| ||||||||||||||| |||||||||||| |||||||| |||||| || |||||||||||||||  |||| |||| |  |||||    
T  13637818 ctacatttcattaaatatttttaaaatcctcacattttatctccgttatcaaaactagtccttgttgttaattctttaacagaatgctgatgtagcagtt 13637719  T
Q  175 agtgagtc 182  Q
    ||||||||    
T  13637718 agtgagtc 13637711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 9218555 - 9218384
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    ||||||| |||||||||||||||||||||||| ||| ||||||||| || |||| |||||||||  || |||||||||| ||||| |||| |||| |||     
T  9218555 gtccctatatttcattaaatgtttttaaaatcatcacattttatcttcgttatc-aaattagtctctgttgttaattctctaacggaatgctgatgtgat 9218457  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    | |||||| ||| ||||||||||| | |||||||| |||||| |   || ||||||| |||||||||| ||||    
T  9218456 aattagtgggtcccaattattttaaggttaaatatgtttttgctccctacattttgcgtgactttgaaaaata 9218384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 90 - 243
Target Start/End: Complemental strand, 26741327 - 26741171
Alignment:
Q  90 tgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtgagtcacaatta 189  Q
    ||||||||||||||||| |||||||||| | ||||||||||||||  ||||||||||||| ||||| |||| |||| || ||||||| | ||| ||||||    
T  26741327 tgtttttaaaatcctcacattttatctctgttatcaaaattagtcattgctgttaattctctaacggaatgctgatgtgccagttagcgggtcccaatta 26741228  T
Q  190 ttttaggattaaatatatttttggt---tatattttgcatgactttgaagaataatc 243  Q
    ||||| | ||||||  ||||||| |   || ||||||| |||||||||| |||||||    
T  26741227 ttttaaggttaaattaatttttgctccctacattttgcgtgactttgaaaaataatc 26741171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 75 - 240
Target Start/End: Original strand, 51471387 - 51471555
Alignment:
Q  75 ctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtt 174  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||  ||  |||  |||| |||   ||||||||| || || ||    
T  51471387 ctacatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtctctgtcgttggttctctaagagaatgttgatgtggcactt 51471486  T
Q  175 agtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    | || ||  ||||||||| ||| |||||||| ||||||||   |||||||||  |||||||||||||||    
T  51471487 aatgggttccaattatttgagggttaaatatgtttttggtccctatattttgtgtgactttgaagaata 51471555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 74 - 240
Target Start/End: Complemental strand, 37172515 - 37172351
Alignment:
Q  74 cctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagt 173  Q
    |||||| || |||||||||||||||||||  || ||||||||||   ||||||||||||||||||||||||||||| ||||| || |     ||||||||    
T  37172515 cctacactttattaaatgtttttaaaatctccacattttatctctattatcaaaattagtccatgctgttaattctctaacggaacg-----atgacagt 37172421  T
Q  174 tagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    ||||| ||| ||||||||||| | |||||| | ||||| ||   |||||||||| |||||||||| ||||    
T  37172420 tagtgggtctcaattattttaaggttaaatttgtttttagtccctatattttgcgtgactttgaaaaata 37172351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 50732273 - 50732351
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattct 149  Q
    |||| ||||||||||||||| ||||||||||||||  |||||||||||| ||||||||||||||| |||||||||||||    
T  50732273 gtccatacatttcattaaatatttttaaaatcctcgcattttatctccgttatcaaaattagtccctgctgttaattct 50732351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 50780582 - 50780504
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattct 149  Q
    |||| ||||||||||||||| ||||||||||||||  |||||||||||| ||||||||||||||| |||||||||||||    
T  50780582 gtccatacatttcattaaatatttttaaaatcctcgcattttatctccgttatcaaaattagtccctgctgttaattct 50780504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 34743507 - 34743376
Alignment:
Q  76 tacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtta 175  Q
    |||||||||||||||||||| |||||||||| ||||||| |  | ||||||||||||||  ||| ||||||||||||||| |    |||| || ||||||    
T  34743507 tacatttcattaaatgttttaaaaatcctcacattttatatatgttatcaaaattagtctctgcggttaattctttaacgga---ctgatgtggcagtta 34743411  T
Q  176 gtgagtcacaattattttaggattaaatatatttt 210  Q
    ||| ||| ||||||||||||| |||||||| ||||    
T  34743410 gtgggtcccaattattttagggttaaatatgtttt 34743376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 240
Target Start/End: Complemental strand, 25770755 - 25770591
Alignment:
Q  74 cctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagt 173  Q
    ||||||||| ||||||||||||||||||  | |||||||||||||| ||| ||||||||||     |||||||||| ||||  ||||  ||| || || |    
T  25770755 cctacattttattaaatgtttttaaaatatttatattttatctccgttataaaaattagtc----ttgttaattctctaacagaatg-cgatgtggcaat 25770661  T
Q  174 tagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    ||||| ||| ||||||||||||| ||||||||||||||| |   || ||||||| |||||||||||||||    
T  25770660 tagtgggtcccaattattttagggttaaatatatttttgatctctacattttgcgtgactttgaagaata 25770591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 44504428 - 44504368
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaatta 131  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  44504428 gtccttacatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaatta 44504368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 43933761 - 43933703
Alignment:
Q  80 tttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatg 138  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||    
T  43933761 tttcattaaatgtttttaaaatcctcatattttatctctgttatcaaaattagttcatg 43933703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 51755956 - 51755903
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatc 124  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  51755956 gtccctacatttcattaaatgtttttaaaatcctcacattttatctccgttatc 51755903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 45728409 - 45728370
Alignment:
Q  37 agggttaaatatgtttttagtccttacattttgcgtccct 76  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  45728409 agggttaaatatgtttttagtccttacattttgtgtccct 45728370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 106
Target Start/End: Complemental strand, 132101 - 132066
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctca 106  Q
    |||| |||||||||||||||||||||||||||||||    
T  132101 gtccttacatttcattaaatgtttttaaaatcctca 132066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 9218606 - 9218571
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgcg 71  Q
    ||||||||||||||||||||||| ||||||||||||    
T  9218606 tagggttaaatatgtttttagtcattacattttgcg 9218571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 43933816 - 43933782
Alignment:
Q  40 gttaaatatgtttttagtccttacattttgcgtcc 74  Q
    ||||||||||||||||||||| |||||||||||||    
T  43933816 gttaaatatgtttttagtcctcacattttgcgtcc 43933782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 70
Target Start/End: Complemental strand, 44504479 - 44504445
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgc 70  Q
    ||||||||||| |||||||||||||||||||||||    
T  44504479 tagggttaaatgtgtttttagtccttacattttgc 44504445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 51471334 - 51471372
Alignment:
Q  38 gggttaaatatgtttttagtccttacattttgcgtccct 76  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  51471334 gggttaaatatgttcttagttcttacattttgcgtccct 51471372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 132151 - 132118
Alignment:
Q  37 agggttaaatatgtttttagtccttacattttgc 70  Q
    |||||||||||||| |||||||||||||||||||    
T  132151 agggttaaatatgtatttagtccttacattttgc 132118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 4199928 - 4199887
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatatttt 112  Q
    |||||||||||||| ||||||||||||||||||  |||||||    
T  4199928 gtccctacatttcaataaatgtttttaaaatccctatatttt 4199887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 25770318 - 25770351
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttg 69  Q
    ||||||| ||||||||||||||||||||||||||    
T  25770318 tagggttcaatatgtttttagtccttacattttg 25770351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 25770494 - 25770527
Alignment:
Q  39 ggttaaatatgtttttagtccttacattttgcgt 72  Q
    ||||||||||||||||| ||||||||||||||||    
T  25770494 ggttaaatatgtttttaatccttacattttgcgt 25770527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 32837282 - 32837315
Alignment:
Q  38 gggttaaatatgtttttagtccttacattttgcg 71  Q
    |||||||||||||| |||||||||||||||||||    
T  32837282 gggttaaatatgttattagtccttacattttgcg 32837315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 36899727 - 36899686
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatatttt 112  Q
    |||||||||||||| ||||||||||||||||||  |||||||    
T  36899727 gtccctacatttcaataaatgtttttaaaatccctatatttt 36899686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 37172254 - 37172287
Alignment:
Q  39 ggttaaatatgtttttagtccttacattttgcgt 72  Q
    |||||||||||||||| |||||||||||||||||    
T  37172254 ggttaaatatgtttttggtccttacattttgcgt 37172287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 13637870 - 13637838
Alignment:
Q  39 ggttaaatatgtttttagtccttacattttgcg 71  Q
    |||||||||||||| ||||||||||||||||||    
T  13637870 ggttaaatatgtttctagtccttacattttgcg 13637838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 26741393 - 26741353
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgcgtccct 76  Q
    |||||||||||||||||| ||||||||| ||||||| ||||    
T  26741393 tagggttaaatatgttttaagtccttacgttttgcgcccct 26741353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 27013411 - 27013443
Alignment:
Q  37 agggttaaatatgtttttagtccttacattttg 69  Q
    |||||||||||||||||||||| ||||||||||    
T  27013411 agggttaaatatgtttttagtctttacattttg 27013443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 27013583 - 27013615
Alignment:
Q  40 gttaaatatgtttttagtccttacattttgcgt 72  Q
    ||||||||||||||| |||||||||||||||||    
T  27013583 gttaaatatgtttttggtccttacattttgcgt 27013615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 33225536 - 33225600
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtcc 135  Q
    |||||||||||| | |||||||||||||||||| || ||||||| || | || |||| |||||||    
T  33225536 gtccctacatttaagtaaatgtttttaaaatccccacattttatatctgttaccaaatttagtcc 33225600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 33226964 - 33226900
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtcc 135  Q
    ||||||| |||| | |||||||||||||||||  || ||||||| || ||||||||| |||||||    
T  33226964 gtccctatatttaagtaaatgtttttaaaatctccaaattttatatctgctatcaaatttagtcc 33226900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 36899301 - 36899333
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  36899301 gtccctacatttcaataaatgtttttaaaatcc 36899333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 42606327 - 42606359
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  42606327 gtccctacatttcaataaatgtttttaaaatcc 42606359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 43933438 - 43933470
Alignment:
Q  37 agggttaaatatgtttttagtccttacattttg 69  Q
    |||||||||||| ||||||||||||||||||||    
T  43933438 agggttaaatatatttttagtccttacattttg 43933470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 45539256 - 45539288
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  45539256 gtccctacatttcaataaatgtttttaaaatcc 45539288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 45539682 - 45539650
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  45539682 gtccctacatttcaataaatgtttttaaaatcc 45539650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 46689729 - 46689761
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  46689729 gtccctacatttcaataaatgtttttaaaatcc 46689761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 48868629 - 48868597
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  48868629 gtccctacatttcaataaatgtttttaaaatcc 48868597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 71 - 243
Target Start/End: Complemental strand, 7646024 - 7645849
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||| ||||||||| |||||||||| ||||| |||| |||||||||||| ||||||||||||||| ||||||||||| | ||||| ||||||||| ||||    
T  7646024 gtccttacatttcaataaatgttttaaaaattctcacattttatctccgttatcaaaattagtccctgctgttaattttctaacggaatgttgatgtgac 7645925  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaataatc 243  Q
    | |||||  ||| ||||||||||||| |||||||| ||||||||    | ||||||| ||||||||||||||||||    
T  7645924 aattagtaggtcccaattattttagggttaaatatgtttttggtcccgacattttgcttgactttgaagaataatc 7645849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 5974059 - 5974202
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    ||||||||||||||||||||||||||||||||| || ||||||| |||| ||| |||||||||||||| |||||||||| ||||| |||| |||| ||||    
T  5974059 gtccctacatttcattaaatgtttttaaaatccccacattttatttccgttattaaaattagtccatgttgttaattctctaacggaatgctgatgtgac 5974158  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt 214  Q
    | |||| | ||| ||||||||||||| |||||||| ||||||||    
T  5974159 aattagcgtgtctcaattattttagggttaaatatgtttttggt 5974202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 17157594 - 17157766
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||| ||||||||||||||| ||||||||||||||| ||||||||||   ||||||||||||||  ||||||||||||| |||||||||| |||| ||      
T  17157594 gtccatacatttcattaaatatttttaaaatcctcacattttatctctattatcaaaattagtcactgctgttaattctctaacgaaatgctgatgtggt 17157693  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    |||||||| ||| ||||||||||||| |||||||| |||||| |   || ||||||  |||||||||||||||    
T  17157694 agttagtgggtcccaattattttagggttaaatatgtttttgatccctacattttgtgtgactttgaagaata 17157766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 75 - 205
Target Start/End: Original strand, 21113081 - 21113211
Alignment:
Q  75 ctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtt 174  Q
    ||||||||||||||||||||||||||| |||| |||||||||||  ||||||||||||||  ||||||||||||| ||||| |||| |||| || |||||    
T  21113081 ctacatttcattaaatgtttttaaaattctcacattttatctcctttatcaaaattagtctctgctgttaattctctaacggaatgctgatgtggcagtt 21113180  T
Q  175 agtgagtcacaattattttaggattaaatat 205  Q
    |||||||| ||||||||||| | ||||||||    
T  21113181 agtgagtcccaattattttaaggttaaatat 21113211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 71 - 214
Target Start/End: Complemental strand, 8710382 - 8710240
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||| |||||||||||||||||||||||||||| || ||||||| || | ||| |||||||||||||| |||||||||| ||||| ||||||||| ||||    
T  8710382 gtccttacatttcattaaatgtttttaaaatccccacattttatttc-gttattaaaattagtccatgttgttaattctctaacggaatgttgatgtgac 8710284  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttggt 214  Q
    | |||||| ||| |||||||||||||  ||||||| ||||||||    
T  8710283 aattagtgtgtctcaattattttagggctaaatatgtttttggt 8710240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 92 - 240
Target Start/End: Original strand, 25932148 - 25932300
Alignment:
Q  92 tttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagttagtgagtcacaattatt 191  Q
    |||||||||||||   |||||||||||| |||||||||||||||||||| ||| |||| ||||| |||| |||| ||   |||||||  || ||||||||    
T  25932148 tttttaaaatccttgcattttatctccgttatcaaaattagtccatgctattatttctctaacggaatgctgatgtgttggttagtggatctcaattatt 25932247  T
Q  192 ttaggattaaatata-tttttggt---tatattttgcatgactttgaagaata 240  Q
    ||||| ||||||||| ||||||||   |||||||||| |||||||||||||||    
T  25932248 ttagggttaaatatattttttggtccctatattttgcgtgactttgaagaata 25932300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 211763 - 211594
Alignment:
Q  71 gtccctacatttcattaaatgttttt-aaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatga 169  Q
    |||||||||||||||||||| ||||| |||||| ||| |||||||||||  ||||||| ||| ||| | ||||||||||| |||||||||| ||   ||     
T  211763 gtccctacatttcattaaatattttttaaaatcttcacattttatctccattatcaaa-ttaatccctactgttaattctctaacgaaatgatg---tgg 211668  T
Q  170 cagttagtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    | ||||||| ||| ||||||||||||| |||||||||||||| ||   || ||||||| | |||||||||||||    
T  211667 cggttagtgggtcccaattattttagggttaaatatattttttgtccctacattttgcgtaactttgaagaata 211594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 1869503 - 1869559
Alignment:
Q  75 ctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaatta 131  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  1869503 ctacatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaatta 1869559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 14713048 - 14712964
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacg 155  Q
    |||| ||||||||||||||||||||  |||| ||||||||||||||| | ||||||||||||||  ||||||||||||| |||||    
T  14713048 gtccttacatttcattaaatgttttagaaatgctcatattttatctctgttatcaaaattagtctctgctgttaattctctaacg 14712964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 4510236 - 4510298
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcct-catattttatctccgctatcaaaattag 132  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||    
T  4510236 gtccctacatttcattaaatgtttttaaaatcctccatattttatctcggttatcaaaattag 4510298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 212
Target Start/End: Complemental strand, 5976101 - 5975959
Alignment:
Q  73 ccctacatttcattaaatgttttta------aaatcctcatattttatctccgctatcaaaattagt-ccatgctgttaattctttaacgaaatgttgat 165  Q
    |||||||||||||||||||||||||      |||| ||||  ||||||||||| | ||||||||||| ||||| |||||||| || |||| |||||        
T  5976101 ccctacatttcattaaatgtttttatttttaaaattctcacgttttatctccgttttcaaaattagttccatgttgttaatttttaaacggaatgtg--- 5976005  T
Q  166 atgacagttagtgagtcacaattattttaggattaaatatatttttg 212  Q
     || |||||||||| || |||||||||||||||||||||| ||||||    
T  5976004 -tggcagttagtgaatcccaattattttaggattaaatatgtttttg 5975959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 155
Target Start/End: Complemental strand, 25932423 - 25932343
Alignment:
Q  75 ctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacg 155  Q
    ||||||||| || |||||| ||||||| |||| |||||||||||| ||||||||||||||  ||| ||||||||| |||||    
T  25932423 ctacatttcgttcaatgttattaaaattctcacattttatctccgttatcaaaattagtctctgccgttaattctctaacg 25932343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 214
Target Start/End: Original strand, 14712708 - 14712848
Alignment:
Q  74 cctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagt 173  Q
    |||| |||| ||||||||||||| ||||||| ||||||||| | || ||| ||||||||| | |  ||||||||||  |||| ||||  ||| |  ||||    
T  14712708 cctatattttattaaatgttttttaaatccttatattttatatgcgttataaaaattagttcctattgttaattctccaacggaatgcggatgtagcagt 14712807  T
Q  174 tagtgagtcacaattattttaggattaaatatatttttggt 214  Q
    ||||| |||  |||||||||| | |||||||| ||||||||    
T  14712808 tagtgggtccaaattattttaaggttaaatatgtttttggt 14712848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 211440 - 211478
Alignment:
Q  38 gggttaaatatgtttttagtccttacattttgcgtccct 76  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  211440 gggttaaatatgtttttagtccttacattttgcgcccct 211478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 17157924 - 17157891
Alignment:
Q  38 gggttaaatatgtttttagtccttacattttgcg 71  Q
    ||||||||||||||||||||||||||||||||||    
T  17157924 gggttaaatatgtttttagtccttacattttgcg 17157891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 4510185 - 4510217
Alignment:
Q  36 tagggttaaatatgtttttagtccttacatttt 68  Q
    |||||||||||||||||||||||||||||||||    
T  4510185 tagggttaaatatgtttttagtccttacatttt 4510217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 19595691 - 19595644
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctcc 118  Q
    |||||||||||||| ||||| ||||||||||||  |||||||||||||    
T  19595691 gtccctacatttcaataaatatttttaaaatccctatattttatctcc 19595644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 5974008 - 5974042
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgc 70  Q
    ||||||||||||||||||||||||||| |||||||    
T  5974008 tagggttaaatatgtttttagtccttatattttgc 5974042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 70
Target Start/End: Complemental strand, 8710433 - 8710399
Alignment:
Q  36 tagggttaaatatgtttttagtccttacattttgc 70  Q
    ||||||||||||||||||||||||||| |||||||    
T  8710433 tagggttaaatatgtttttagtccttatattttgc 8710399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 211489 - 211530
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatatttt 112  Q
    |||| |||||||||||||||| |||||||||||||| |||||    
T  211489 gtccgtacatttcattaaatgattttaaaatcctcacatttt 211530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Complemental strand, 7646071 - 7646042
Alignment:
Q  40 gttaaatatgtttttagtccttacattttg 69  Q
    ||||||||||||||||||||||||||||||    
T  7646071 gttaaatatgtttttagtccttacattttg 7646042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 34984586 - 34984553
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcct 104  Q
    |||||||||||||| |||||||||||||||||||    
T  34984586 gtccctacatttcaataaatgtttttaaaatcct 34984553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 211811 - 211779
Alignment:
Q  39 ggttaaatatgtttttagtccttacattttgcg 71  Q
    ||||||||||||||||| |||||||||||||||    
T  211811 ggttaaatatgtttttaatccttacattttgcg 211779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 66
Target Start/End: Original strand, 1869450 - 1869478
Alignment:
Q  38 gggttaaatatgtttttagtccttacatt 66  Q
    |||||||||||||||||||||||||||||    
T  1869450 gggttaaatatgtttttagtccttacatt 1869478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 14257194 - 14257226
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  14257194 gtccctacatttcaataaatgtttttaaaatcc 14257226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 14257620 - 14257588
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  14257620 gtccctacatttcaataaatgtttttaaaatcc 14257588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 20522198 - 20522134
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtcc 135  Q
    |||||||||||||| |||||||||||||||||   | |||||| ||||| |  ||||||||||||    
T  20522198 gtccctacatttcaataaatgtttttaaaatcactacattttacctccgtttacaaaattagtcc 20522134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 20824211 - 20824243
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcc 103  Q
    |||||||||||||| ||||||||||||||||||    
T  20824211 gtccctacatttcaataaatgtttttaaaatcc 20824243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 75 - 240
Target Start/End: Complemental strand, 35230 - 35062
Alignment:
Q  75 ctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtt 174  Q
    |||||||| ||| ||||||||||||||||||| |||||||||| | ||| |||||||||  ||||| |||| ||| ||||  ||||||||| ||  ||||    
T  35230 ctacattttattgaatgtttttaaaatcctcacattttatctcggttatgaaaattagtttatgctcttaactctctaacagaatgttgatgtgggagtt 35131  T
Q  175 agtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaata 240  Q
    |||||||| |||||||| |||| ||| |||| ||||||||   || ||||| | |||||||||||||||    
T  35130 agtgagtctcaattattgtagggttacatatgtttttggtccctagattttacgtgactttgaagaata 35062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 212
Target Start/End: Original strand, 34840 - 34981
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgac 170  Q
    |||| |||||||||||||||||||||||| | |||| |||||||||||| ||||||||||||||  |||| |||||| | |||||  ||| |||| |  |    
T  34840 gtccatacatttcattaaatgtttttaaagtactcacattttatctccgttatcaaaattagtctctgctattaattttctaacgggatgctgatgtcgc 34939  T
Q  171 agttagtgagtcacaattattttaggattaaatatatttttg 212  Q
    ||| |||| ||  ||||||||||| | |||||||| ||||||    
T  34940 agtcagtgggtttcaattattttaaggttaaatatgtttttg 34981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 35281 - 35245
Alignment:
Q  40 gttaaatatgtttttagtccttacattttgcgtccct 76  Q
    |||||||||||||||||||||||||||||||||||||    
T  35281 gttaaatatgtttttagtccttacattttgcgtccct 35245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 242
Target Start/End: Original strand, 544 - 713
Alignment:
Q  76 tacatttcattaaatgtttttaaaatcctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgttgatatgacagtta 175  Q
    ||||||||||||||||||||||||||  ||| ||||||| |  | |||||||||||||| ||| ||||| || | ||||| |||| |||| |   |||||    
T  544 tacatttcattaaatgtttttaaaattttcacattttatttttgttatcaaaattagtctatgttgttatttttctaacggaatgctgatgtagtagtta 643  T
Q  176 gtgagtcacaattattttaggattaaatatatttttggt---tatattttgcatgactttgaagaataat 242  Q
     |  ||||||||||||||||| |||||||| |  || ||   |||||||||| |||||||||||||||||    
T  644 ataggtcacaattattttagggttaaatatgtagtttgtccctatattttgcgtgactttgaagaataat 713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 39894 - 39861
Alignment:
Q  71 gtccctacatttcattaaatgtttttaaaatcct 104  Q
    |||||||||||||| |||||||||||||||||||    
T  39894 gtccctacatttcaataaatgtttttaaaatcct 39861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 25935 - 25903
Alignment:
Q  36 tagggttaaatatgtttttagtccttacatttt 68  Q
    |||||||||||||||||||||||| ||||||||    
T  25935 tagggttaaatatgtttttagtccctacatttt 25903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University