View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_low_72 (Length: 251)
Name: NF1133_low_72
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_72 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 8336576 - 8336816
Alignment:
| Q |
1 |
caatgactggaccagcctctttcctatcactgttatattgaacaaactttgcagcatactcctcccacagagtacagttcagaacaatatcactaagaat |
100 |
Q |
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| T |
8336576 |
caatgactggaccagcctctttcctatcactgttatattgaacaaactttgcagcatactcctcccacagagtacagttcagaacaatatcactaagaat |
8336675 |
T |
|
| Q |
101 |
cataacac-aaaggaatttaagttggttgaaaactctaaggaaaaaattataaggtaataagtattgcaatatgataactaaagtgtaactaaaccttat |
199 |
Q |
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| T |
8336676 |
cataacacgaaaggaatttaagttggttgaaaactgtaaggaaaaaattataaggtaataagtattgcaatatgataactaaagtgtaactaaaccttat |
8336775 |
T |
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| Q |
200 |
atctttcatagtgaaagtgacttgaagttttttcccttcat |
240 |
Q |
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| T |
8336776 |
atctttcatagtgaaattgacttgaagctttttcccttcat |
8336816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 10233692 - 10233932
Alignment:
| Q |
1 |
caatgactggaccagcctctttcctatcactgttatattgaacaaactttgcagcatactcctcccacagagtacagttcagaacaatatcactaagaat |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10233692 |
caatgactagaccagcctctttcctatcactgttatattgaacaaacttcggagcatactcctcccacagagtacagttcagaacaatatcacaaagaat |
10233791 |
T |
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| Q |
101 |
cataacac-aaaggaatttaagttggttgaaaactctaaggaaaaaattataaggtaataagtattgcaatatgataactaaagtgtaactaaaccttat |
199 |
Q |
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| T |
10233792 |
cataacacgaaaggaatttaagttggttgaaaactctaaggaaaaaattataaggtaataagtattgcaatatgataactaaagtgtaactaaaccttat |
10233891 |
T |
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| Q |
200 |
atctttcatagtgaaagtgacttgaagttttttcccttcat |
240 |
Q |
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|||||||||||||||| |||||||||| ||||||||||||| |
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| T |
10233892 |
atctttcatagtgaaattgacttgaagctttttcccttcat |
10233932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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