View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_low_78 (Length: 251)
Name: NF1133_low_78
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_78 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 47073265 - 47073028
Alignment:
| Q |
1 |
cgacgattaaaattgattgacagtatgcaaaaagtttacactaacagcgcatataaattaaatccttaaaaataaccaatcaaatgtccatgatcttccc |
100 |
Q |
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| T |
47073265 |
cgacgattaaaattgattgacagtatgcaaaaagtttacactaacagcgcatataaattaaatccttaaaaataaccaatcaaatgtccatgatcttccc |
47073166 |
T |
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| Q |
101 |
gtaggatggagttgttacggatcttcaagaaaccataaatgctgtggttaaagcatctgatcttcccttatcaattcttatagttggtgttggaagcact |
200 |
Q |
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| T |
47073165 |
gtaggatggagttgttacggatcttcaagaaaccataaatgctgtggttaaagcatctgatcttcccttatcaattcttatagttggtgttggaagcact |
47073066 |
T |
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| Q |
201 |
gatttcaagagcatggaggtctacttatatccttgcct |
238 |
Q |
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| T |
47073065 |
gatttcaagagcatggaggtttacttatatccttgcct |
47073028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 193
Target Start/End: Complemental strand, 47055139 - 47055048
Alignment:
| Q |
102 |
taggatggagttgttacggatcttcaagaaaccataaatgctgtggttaaagcatctgatcttcccttatcaattcttatagttggtgttgg |
193 |
Q |
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| T |
47055139 |
taggatggaattgttacggatcttcatgaatcaataaatgctgttgttaatgcttccgatcttcccctgtcgatacttatagttggtgttgg |
47055048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 73 - 246
Target Start/End: Original strand, 18231924 - 18232097
Alignment:
| Q |
73 |
taaccaatcaaatgtccatgatcttcccgtaggatggagttgttacggatcttcaagaaaccataaatgctgtggttaaagcatctgatcttcccttatc |
172 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||| |
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| T |
18231924 |
taaccaatcaaatgtccatgatcttcccacaggatggagttgttacggatcttcaagaaaccatagattctgtggttaaagcatctgatcttccgttatc |
18232023 |
T |
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| Q |
173 |
aattcttatagttggtgttggaagcactgatttcaagagcatggaggtctacttatatccttgcctttgtttct |
246 |
Q |
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| T |
18232024 |
gattcttatagttggtgttggaagcgctgatttcacgagcatggaggtctgcttttatcgttccctatgtttct |
18232097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 40131992 - 40131886
Alignment:
| Q |
102 |
taggatggagttgttacggatcttcaagaaaccataaatgctgtggttaaagcatctgatcttcccttatcaattcttatagttggtgttggaagcactg |
201 |
Q |
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|||||||||||||| |||||||| |||||||| | | |||| | ||||||||||| || || || |||||||| ||||| ||||| || ||| | ||| |
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| T |
40131992 |
taggatggagttgtgacggatctccaagaaacaaaagatgcacttgttaaagcatcggacctaccattatcaatccttatcgttggcgtaggaggagctg |
40131893 |
T |
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| Q |
202 |
atttcaa |
208 |
Q |
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||||||| |
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| T |
40131892 |
atttcaa |
40131886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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