View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_low_81 (Length: 251)
Name: NF1133_low_81
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_81 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 40 - 251
Target Start/End: Complemental strand, 31787773 - 31787556
Alignment:
| Q |
40 |
ttcattacatttaattatgtcattttatttcaaattcaaatcacacaag------ctacatgttactttannnnnnngaaattcaaataattatcggtgt |
133 |
Q |
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| T |
31787773 |
ttcattacatttaattatgtcattttgtttcaaattcaaatcagacaggacgtcgctacatgttactttatttttttgaaattcaaataattatcggtgt |
31787674 |
T |
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| Q |
134 |
tgacgagggaaatgttttgtaattaactaatataactaacatttatatctaatgcaggtggtgtaggtggttatggaacaaccactgaatatggaagtac |
233 |
Q |
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| T |
31787673 |
tgacgagggaaatgtgttgtaattaactaatataactaataattatatctaatgcaggtggtgtaggtggttatggaacaaccactgaatatggaagtac |
31787574 |
T |
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| Q |
234 |
caacactggaagtggtta |
251 |
Q |
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| T |
31787573 |
caacactggaagtggtta |
31787556 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 23290626 - 23290594
Alignment:
| Q |
43 |
attacatttaattatgtcattttatttcaaatt |
75 |
Q |
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| T |
23290626 |
attacattcaattatgtcattttatttcaaatt |
23290594 |
T |
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