View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1133_low_84 (Length: 244)

Name: NF1133_low_84
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1133_low_84
NF1133_low_84
[»] scaffold0385 (1 HSPs)
scaffold0385 (1-196)||(3341-3537)
[»] chr4 (3 HSPs)
chr4 (1-196)||(22196854-22197050)
chr4 (3-192)||(34014447-34014637)
chr4 (1-124)||(6452823-6452946)
[»] chr7 (4 HSPs)
chr7 (1-180)||(7283206-7283385)
chr7 (1-164)||(44522148-44522311)
chr7 (30-196)||(44233024-44233191)
chr7 (99-166)||(47801260-47801327)
[»] chr6 (3 HSPs)
chr6 (3-171)||(12335396-12335564)
chr6 (69-167)||(20565576-20565674)
chr6 (69-124)||(16266447-16266502)
[»] chr2 (4 HSPs)
chr2 (1-196)||(36965138-36965334)
chr2 (1-184)||(25603125-25603308)
chr2 (2-184)||(23910692-23910874)
chr2 (91-139)||(2089741-2089789)
[»] scaffold0343 (1 HSPs)
scaffold0343 (1-196)||(14541-14737)
[»] chr8 (1 HSPs)
chr8 (1-157)||(27421027-27421179)
[»] scaffold0181 (1 HSPs)
scaffold0181 (38-167)||(13332-13461)
[»] scaffold0123 (1 HSPs)
scaffold0123 (93-142)||(46211-46260)
[»] chr3 (5 HSPs)
chr3 (38-95)||(7582119-7582176)
chr3 (69-129)||(1645771-1645831)
chr3 (37-95)||(21096070-21096128)
chr3 (91-167)||(21736885-21736961)
chr3 (69-129)||(35273280-35273340)
[»] chr5 (1 HSPs)
chr5 (86-123)||(380096-380133)
[»] chr1 (2 HSPs)
chr1 (98-167)||(23027927-23027996)
chr1 (44-129)||(50817825-50817910)


Alignment Details
Target: scaffold0385 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 3341 - 3537
Alignment:
Q  1 ccctttcaggagactcgtccaccgacgttagatattgataagttcccttcactgaatagccatgagcgggatcaagaagccacctccacctgtcatgaac 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  3341 ccctttcaggagattcgtccaccgacgttagatattgataagttcccttcactgaataaccgtgagcgggatcaagaagccacctccacctgtcatgaac 3440  T
Q  101 attagcctgcaaaacaacattatgtaataggatagaacattcggtgacactctcctcctcccaagcatgcagacgcctacgccatc-ccacgcatca 196  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  3441 attagcctgcaaaacaacatcatgtaataggatagaacattcagtgacactctcctcctcccaagcatgcaggcgcctacgccatctccacgcatca 3537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 22197050 - 22196854
Alignment:
Q  1 ccctttcaggagactcgtccaccgacgttagatattgataagttcccttcactgaatagccatgagcgggatcaagaagccacctccacctgtcatgaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  22197050 ccctttcaggagactcgtccaccgacgttagatattgataagctcccttcactgaatagccgtgagcgggatcaagaagccacctccacctgttatgaac 22196951  T
Q  101 attagcctgcaaaacaacattatgtaataggatagaacattcggtgacactctcctcctcccaagcatgcagacgcctacgccat-cccacgcatca 196  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  22196950 attagcctgcaaaacaacatcatgtaataggatagaacattcagtgacactctcctcctcccaagcatgcaggcgcctacgccatccccacgcatca 22196854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 34014637 - 34014447
Alignment:
Q  3 ctttcaggagactcgtccaccgacgttagatattgataagttcccttcactgaatagccatgagcgggatcaagaagccacctccacctgtcatgaacat 102  Q
    ||||||||||||||||||| || ||| ||||||||||||||||||||||| || |||||||| | |||||||||||||||||||||||||||||||| ||    
T  34014637 ctttcaggagactcgtccatcgtcgtgagatattgataagttcccttcacggagtagccatgtgtgggatcaagaagccacctccacctgtcatgaatat 34014538  T
Q  103 tagcctgcaaaacaacattatgtaataggatagaacattcggtgacactctcctcctcccaagcatgcagacgcctacgcca-tcccacgc 192  Q
     ||||||||||||||||| ||| || |||||||||||||| | |||||||||||||||||||||||||| |||| ||||||| ||||||||    
T  34014537 gagcctgcaaaacaacatcatgcaaaaggatagaacattctgcgacactctcctcctcccaagcatgcatacgcttacgccagtcccacgc 34014447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 6452946 - 6452823
Alignment:
Q  1 ccctttcaggagactcgtccaccgacgttagatattgataagttcccttcactgaatagccatgagcgggatcaagaagccacctccacctgtcatgaac 100  Q
    |||||||| |||  |||||||||| ||| ||||| ||||||||| |||||||||||||| | ||||| ||||||||||||||||||||||||||||||||    
T  6452946 ccctttcaagaggttcgtccaccgtcgtgagataatgataagtttccttcactgaatagtcgtgagcaggatcaagaagccacctccacctgtcatgaac 6452847  T
Q  101 attagcctgcaaaacaacattatg 124  Q
    || |||||  ||||||| ||||||    
T  6452846 atgagcctataaaacaatattatg 6452823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 7283206 - 7283385
Alignment:
Q  1 ccctttcaggagactcgtccaccgacgttagatattgataagttcccttcactgaatagccatgagcgggatcaagaagccacctccacctgtcatgaac 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||    
T  7283206 ccctttcaggagactcatccaccgacgttagatattgataagttcccttcactgaatagccgtgaacaggatcaagaagccacctccacctgtcatgaac 7283305  T
Q  101 attagcctgcaaaacaacattatgtaataggatagaacattcggtgacactctcctcctcccaagcatgcagacgcctac 180  Q
    |||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||| ||||| |||||| |||||||    
T  7283306 attagcctgcaaaacaacatcatgtaataggatagaacattcaatgacactctcctccttccaagtatgcaggcgcctac 7283385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 44522148 - 44522311
Alignment:
Q  1 ccctttcaggagactcgtccaccgacgttagatattgataagttcccttcactgaatagccatgagcgggatcaagaagccacctccacctgtcatgaac 100  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44522148 ccctttcaggagactcgtccaccgacgttggatattgataagctcccttcactgaatagccgtgagcgggatcaagaagccacctccacctgtcatgaac 44522247  T
Q  101 attagcctgcaaaacaacattatgtaataggatagaacattcggtgacactctcctcctcccaa 164  Q
    || ||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||    
T  44522248 atcagcctgcaaaacagcatcatgtaataggatagaacattcagtgacactctcctcctcccaa 44522311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 30 - 196
Target Start/End: Complemental strand, 44233191 - 44233024
Alignment:
Q  30 agatattgataagttcccttcactgaatagccatgagcgggatcaagaagccacctccacctgtcatgaacattagcctgcaaaacaacattatgtaata 129  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| | ||    
T  44233191 agatattgataggttcccttgactgaatagccatgagcgggatcaataagccacctccacctgtcatgaacatgagcctgcaaaacaacatcatgcagta 44233092  T
Q  130 ggatagaacattcggtgacactctcctcctcccaagcatgcagacgcctacgccatcc-cacgcatca 196  Q
    | ||||||||||| ||||||||||||||||||||||||||||| | ||||||||| || |||||||||    
T  44233091 gtatagaacattctgtgacactctcctcctcccaagcatgcaggcacctacgccagccacacgcatca 44233024  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 47801260 - 47801327
Alignment:
Q  99 acattagcctgcaaaacaacattatgtaataggatagaacattcggtgacactctcctcctcccaagc 166  Q
    |||||| ||||||||||||  ||||||||||| ||||| |||||  | ||||| ||||||||||||||    
T  47801260 acattatcctgcaaaacaatgttatgtaatagaatagagcattccctcacactttcctcctcccaagc 47801327  T

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Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 3 - 171
Target Start/End: Complemental strand, 12335564 - 12335396
Alignment:
Q  3 ctttcaggagactcgtccaccgacgttagatattgataagttcccttcactgaatagccatgagcgggatcaagaagccacctccacctgtcatgaacat 102  Q
    |||||||||||||||||||||  ||| | ||||||||||||||||||||| || ||||||||| |||||||| | |||||||||||||||| ||||| ||    
T  12335564 ctttcaggagactcgtccaccatcgtgatatattgataagttcccttcacggagtagccatgaccgggatcaggtagccacctccacctgttatgaatat 12335465  T
Q  103 tagcctgcaaaacaacattatgtaataggatagaacattcggtgacactctcctcctcccaagcatgca 171  Q
     ||||| ||||||||||| ||| || |||||||||||||  ||||||||||||||||||||||||||||    
T  12335464 gagcctacaaaacaacatcatgcaaaaggatagaacatttcgtgacactctcctcctcccaagcatgca 12335396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 167
Target Start/End: Original strand, 20565576 - 20565674
Alignment:
Q  69 ggatcaagaagccacctccacctgtcatgaacattagcctgcaaaacaacattatgtaataggatagaacattcggtgacactctcctcctcccaagca 167  Q
    ||||||||||||||||||||| ||||||||  || |||||||||||||| |||| | |  |  | |||||| || || |||| ||||||||||||||||    
T  20565576 ggatcaagaagccacctccacttgtcatgataatgagcctgcaaaacaatattacgcagcaaaacagaacactccgtaacaccctcctcctcccaagca 20565674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 16266447 - 16266502
Alignment:
Q  69 ggatcaagaagccacctccacctgtcatgaacattagcctgcaaaacaacattatg 124  Q
    ||||||||||||||||||||||||||| | |||| |  ||||||||||| ||||||    
T  16266447 ggatcaagaagccacctccacctgtcaggtacatgatactgcaaaacaatattatg 16266502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 36965138 - 36965334
Alignment:
Q  1 ccctttcaggagactcgtccaccgacgttagatattgataagttcccttcactgaatagccatgagcgggatcaagaagccacctccacctgtcatgaac 100  Q
    ||||||||||||  | ||||  || ||| ||||||||||| |||||||| ||||||||| | ||||||||||||| ||||||||||| ||| ||||||||    
T  36965138 ccctttcaggagggttgtccgtcgtcgtgagatattgataggttcccttgactgaatagtcgtgagcgggatcaataagccacctccccctatcatgaac 36965237  T
Q  101 attagcctgcaaaacaacattatgtaataggatagaacattcggtgacactctcctcctcccaagcatgcagacgcctacgcca-tcccacgcatca 196  Q
    || ||||||||||||||||| ||| | ||| ||||||||||  ||||||||||||||||||||||||||||| |||||||||||  |||||||||||    
T  36965238 atgagcctgcaaaacaacatcatgcagtagtatagaacattttgtgacactctcctcctcccaagcatgcaggcgcctacgccagccccacgcatca 36965334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 25603125 - 25603308
Alignment:
Q  1 ccctttcaggagactcgtccaccgacgttagatattgataagttcccttcactgaatagccatgagcgggatcaagaagccacctccacctgtcatgaac 100  Q
    ||||||| |||| ||||| | ||| ||| ||||||||||| |||||||||||| ||||||| |||||||||||||  |||||||||||||||||| ||||    
T  25603125 ccctttccggaggctcgttcgccgtcgtgagatattgataggttcccttcactaaatagccgtgagcgggatcaatgagccacctccacctgtcaggaac 25603224  T
Q  101 attagcctgcaaaacaacattatgtaataggatagaacattcggtgacactctcctcctcccaagcatgcagacgcctacgcca 184  Q
    || ||||||||||||||||| ||| | | | ||||||||||  |||||||||||||||| |||||||||||| ||||| |||||    
T  25603225 atgagcctgcaaaacaacatcatgcagtggtatagaacattttgtgacactctcctcctgccaagcatgcaggcgcctccgcca 25603308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 184
Target Start/End: Complemental strand, 23910874 - 23910692
Alignment:
Q  2 cctttcaggagactcgtccaccgacgttagatattgataagttcccttcactgaatagccatgagcgggatcaagaagccacctccacctgtcatgaaca 101  Q
    ||||| ||||| |||||||| || ||| ||| | || |||||||||||| ||||||| |  |||||| |||| | |||||||||||| ||||||||||||    
T  23910874 ccttttaggaggctcgtccatcgtcgtgagaaactggtaagttcccttcgctgaataacagtgagcgagatccataagccacctccatctgtcatgaaca 23910775  T
Q  102 ttagcctgcaaaacaacattatgtaataggatagaacattcggtgacactctcctcctcccaagcatgcagacgcctacgcca 184  Q
    ||||| ||||||||||||| ||| ||||||||||||||||  || || |||||||||| ||||||||| || |||||||||||    
T  23910774 ttagcatgcaaaacaacatcatgcaataggatagaacattatgtaacgctctcctccttccaagcatgaaggcgcctacgcca 23910692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 2089741 - 2089789
Alignment:
Q  91 tgtcatgaacattagcctgcaaaacaacattatgtaataggatagaaca 139  Q
    |||||| ||||||| ||||||||||||||||| ||||||  ||||||||    
T  2089741 tgtcattaacattatcctgcaaaacaacattaggtaataacatagaaca 2089789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 14541 - 14737
Alignment:
Q  1 ccctttcaggagactcgtccaccgacgttagatattgataagttcccttcactgaatagccatgagcgggatcaagaagccacctccacctgtcatgaac 100  Q
    ||||||||  || |||||||| || ||| ||| | || |||||||||||||||||||| || ||||||||||||| |||||||||||| |||||||||||    
T  14541 ccctttcattaggctcgtccatcgtcgtgagaaactggtaagttcccttcactgaataaccgtgagcgggatcaataagccacctccatctgtcatgaac 14640  T
Q  101 attagcctgcaaaacaacattatgtaataggatagaacattcggtgacactctcctcctcccaagcatgcagacgcctacgcca-tcccacgcatca 196  Q
    | |||||||||||||||||| ||| ||||| |||||||||||  | || |||||||||||||||||||| || ||||||| |||  |||||||||||    
T  14641 aatagcctgcaaaacaacatcatgcaatagaatagaacattctttaacgctctcctcctcccaagcatgaaggcgcctacaccagccccacgcatca 14737  T

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Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 27421027 - 27421179
Alignment:
Q  1 ccctttcaggagactcgtccaccgacgttagatattgataagttcccttcactgaatagccatgagcgggatcaagaagccacctccacctgtcatgaac 100  Q
    ||||||| |||| ||||||| ||| ||| ||||||||||| ||||||||||||    |||| ||||||||||| |  |||||||| ||||||||| ||||    
T  27421027 ccctttccggaggctcgtccgccgtcgtgagatattgataggttcccttcact----agccgtgagcgggatcgatgagccaccttcacctgtcaggaac 27421122  T
Q  101 attagcctgcaaaacaacattatgtaataggatagaacattcggtgacactctcctc 157  Q
    || ||||||||||||||||| ||| | ||| ||||||||||  ||||||||||||||    
T  27421123 atgagcctgcaaaacaacatcatgcagtagtatagaacattatgtgacactctcctc 27421179  T

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Target: scaffold0181 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 167
Target Start/End: Original strand, 13332 - 13461
Alignment:
Q  38 ataagttcccttcactgaatagccatgagcgggatcaagaagccacctccacctgtcatgaacattagcctgcaaaacaacattatgtaataggatagaa 137  Q
    |||||||||||| || |||||||||  |  ||||||||||||||||| |||||||| | | | || | ||||||||||||  | |||||| | || ||||    
T  13332 ataagttcccttaaccgaatagccactaatgggatcaagaagccacccccacctgttaggtaaatgatcctgcaaaacaatgtcatgtaacaagacagaa 13431  T
Q  138 cattcggtgacactctcctcctcccaagca 167  Q
    |||||  | |||| ||||||||||||||||    
T  13432 cattccctaacacactcctcctcccaagca 13461  T

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Target: scaffold0123 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 46260 - 46211
Alignment:
Q  93 tcatgaacattagcctgcaaaacaacattatgtaataggatagaacattc 142  Q
    |||||||||||| ||||||||||||||||||||||||  |||||||||||    
T  46260 tcatgaacattatcctgcaaaacaacattatgtaataaaatagaacattc 46211  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 7582176 - 7582119
Alignment:
Q  38 ataagttcccttcactgaatagccatgagcgggatcaagaagccacctccacctgtca 95  Q
    |||||||||||| || ||||| |||| | |||||||||||||||||||||||||||||    
T  7582176 ataagttcccttaacggaataaccattaacgggatcaagaagccacctccacctgtca 7582119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 1645771 - 1645831
Alignment:
Q  69 ggatcaagaagccacctccacctgtcatgaacattagcctgcaaaacaacattatgtaata 129  Q
    ||||| |||||||| ||||||||||||| ||||| | ||||||||||||  ||||||||||    
T  1645771 ggatctagaagccaactccacctgtcattaacatcatcctgcaaaacaatgttatgtaata 1645831  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 21096070 - 21096128
Alignment:
Q  37 gataagttcccttcactgaatagccatgagcgggatcaagaagccacctccacctgtca 95  Q
    ||||||||||||| || || || |||| | |||||||||| ||||||||||||||||||    
T  21096070 gataagttcccttaacagattaaccattaacgggatcaagcagccacctccacctgtca 21096128  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 21736961 - 21736885
Alignment:
Q  91 tgtcatgaacattagcctgcaaaacaacattatgtaataggatagaacattcggtgacactctcctcctcccaagca 167  Q
    ||||||| |||||| ||||||||||||  |||  ||| ||| ||||||| ||  | |||||||||||||||||||||    
T  21736961 tgtcatggacattaccctgcaaaacaatgttacataacagggtagaacactccctcacactctcctcctcccaagca 21736885  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 35273280 - 35273340
Alignment:
Q  69 ggatcaagaagccacctccacctgtcatgaacattagcctgcaaaacaacattatgtaata 129  Q
    ||||| ||||| || ||||||||||||| ||| | ||||||||||||||  ||||||||||    
T  35273280 ggatctagaagtcagctccacctgtcattaacctcagcctgcaaaacaatgttatgtaata 35273340  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 380096 - 380133
Alignment:
Q  86 ccacctgtcatgaacattagcctgcaaaacaacattat 123  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  380096 ccacctgtcaagaacattagtctgcaaaacaacattat 380133  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 23027927 - 23027996
Alignment:
Q  98 aacattagcctgcaaaacaacattatgtaataggatagaacattcggtgacactctcctcctcccaagca 167  Q
    ||||||| ||||||||||||||||||||||||  || ||||| ||    |||| ||||||||||||||||    
T  23027927 aacattaacctgcaaaacaacattatgtaataatatggaacactcccgcacacactcctcctcccaagca 23027996  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 50817910 - 50817825
Alignment:
Q  44 tcccttcactgaatagccatgagcgggatcaagaagccacctccacctgtcatgaacattagcctgcaaaacaacattatgtaata 129  Q
    |||||||||  |||||||||||   ||||| |||  ||||||||||||||||  |  |||| ||||||||||||||||||| ||||    
T  50817910 tcccttcacataatagccatgaataggatccagactccacctccacctgtcaatagtattatcctgcaaaacaacattatgcaata 50817825  T

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