View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1133_low_86 (Length: 240)
Name: NF1133_low_86
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_86 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 47515754 - 47515530
Alignment:
| Q |
16 |
catatttgtgcgtgtaatatatattggcgtcctttatttaacatcctctgttaatgggtctgtattctgtgttgtatttgtttgtattaatgttattgca |
115 |
Q |
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| T |
47515754 |
catattcgtgcgtgtaatatatattggcgtcctttatttaaaatcctctgttaatgggtctgtattctgtgttgtatttgtttgtattaatgttattgca |
47515655 |
T |
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| Q |
116 |
tgtttttctcatagcatctcaattctgatattataggatgggctgagaattacatacttctggattaaagagcagcttgagaaagagaaggctggaggtg |
215 |
Q |
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| T |
47515654 |
tgtttttctcatagcatctcaattctgatattataggatgggctgagaattacatacttctggattaaagagcagcttgagaaagagaaggctggaggtg |
47515555 |
T |
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| Q |
216 |
tagatgtaacatcctatggatcgtc |
240 |
Q |
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| T |
47515554 |
ttgatgtaacatcctatggatcgtc |
47515530 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 208
Target Start/End: Original strand, 36023403 - 36023480
Alignment:
| Q |
131 |
atctcaattctgatattataggatgggctgagaattacatacttctggattaaagagcagcttgagaaagagaaggct |
208 |
Q |
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|||| ||||||| |||| |||||||||||||| |||||||| |||||||||| || || ||||| || ||||||||| |
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| T |
36023403 |
atctaaattctggtattgtaggatgggctgaggattacatatgtctggattaaggaacaacttgaaaaggagaaggct |
36023480 |
T |
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