View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1133_low_9 (Length: 516)
Name: NF1133_low_9
Description: NF1133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1133_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 30 - 501
Target Start/End: Complemental strand, 7013092 - 7012621
Alignment:
| Q |
30 |
ttttgctagcttctcgctccattgaagtggctcaacacctacttcagctcttgctttgttgtgtgattctaagaactctttagctgctggtggaagaggt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7013092 |
ttttgctagcttctcgctccattgaagtggctcaacacctacttcagctcttgctttgttgtgtgattctaagaactctttagctgctggtgtaagaggt |
7012993 |
T |
|
| Q |
130 |
ggcggtgctgtttgctccggagtggtggctgctggtcttgcagcggtggacgagacaaggagcagggatagagttgctagggagaaga---gaggaaaat |
226 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7012992 |
ggcggtgctgttggctccggagtggtggctgctggtcttgcagcggtggacgagacaaggagcagggatagagttgctagggagaagaagagaggaaaat |
7012893 |
T |
|
| Q |
227 |
aatataacattttcatgtgagcttatcggttgagaaaataacaataatattaaggatgtgacaaagtttgaagtcacggatgggaccatatttatattta |
326 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7012892 |
aatgtaacattttcatgtgagcttatcggttgagaaaataacaataatattaaggatgtgacaaagtttgaagtcacggatgggaccatatttatattta |
7012793 |
T |
|
| Q |
327 |
tatagactttggtccaatggggtaaagttgatttactaagctgtccttgattgtgaaatttcagtaaaagacattctgatacagactttgggagcttgga |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7012792 |
tatagactttggtccaatggggtaaagttgatttactaagctgtccttgattgtgaaatttcagtaaaagacattctgatacagactttgggagcttgga |
7012693 |
T |
|
| Q |
427 |
aattttgacatggagtgcaagctgtattgcaatttgtagagtttgttgtcatgtattctattgagatctctgtag |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| |
|
|
| T |
7012692 |
aattttgacatggagtgcaagctgtattgcaatttgtggagt---ttgtcatgtatgctattgagatctctgtag |
7012621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 7006708 - 7006599
Alignment:
| Q |
30 |
ttttgctagcttctcgctccattgaagtggctcaacacctacttcagctcttgctttgttgtgtgattctaagaactctttagctgctggtggaagaggt |
129 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||| | |
|
|
| T |
7006708 |
ttttgctagattctcactccattgaagtggctcaacacctacttcagctcatgctttgttgtgagattctaagaactctttggctgctggtggaagagat |
7006609 |
T |
|
| Q |
130 |
ggcggtgctg |
139 |
Q |
| |
|
|| ||||||| |
|
|
| T |
7006608 |
ggtggtgctg |
7006599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 181 - 323
Target Start/End: Complemental strand, 7006595 - 7006466
Alignment:
| Q |
181 |
gagacaaggagcagggatagagttgctagggagaagagaggaaaataatataacattttcatgtgagcttatcggttgagaaaataacaataatattaag |
280 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||| |||||||||| ||||| |
|
|
| T |
7006595 |
gagacaacgagcagggatagagttgctagggaaaagagaggaaaataatgtaacattttcat------------gttgaaaaagtaacaataattttaag |
7006508 |
T |
|
| Q |
281 |
gatgtgacaaagtttgaagtcacggatgggaccatatttatat |
323 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7006507 |
gatgtgacaaag-ttgaagtcacggatgggaccatatttatat |
7006466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 7694902 - 7695011
Alignment:
| Q |
30 |
ttttgctagcttctcgctccattgaagtggctcaacacctacttcagctcttgctttgttgtgtgattctaagaactctttagctgctggtggaagaggt |
129 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |||||||||||||||||||| ||||||||| |||||||||||| ||| |||| ||||||||||||| |
|
|
| T |
7694902 |
ttttgctagcttctcgccccattaaagtgggtcaacacctacttcagctctatctttgttgttctattctaagaactttttggctggtggtggaagaggt |
7695001 |
T |
|
| Q |
130 |
ggcggtgctg |
139 |
Q |
| |
|
|| ||||||| |
|
|
| T |
7695002 |
ggtggtgctg |
7695011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University