View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11340_low_1 (Length: 1068)
Name: NF11340_low_1
Description: NF11340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11340_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 273 - 873
Target Start/End: Complemental strand, 54607804 - 54607192
Alignment:
| Q |
273 |
ttcctcttaattttacacaaatattaattattattacatggaagagggacgtgtgattaatcgtaacccaagttatcaaaataaggaatgtgggtccaat |
372 |
Q |
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| T |
54607804 |
ttcctcttaattttacacaaatattaattattattacatggaagagggacgtgtgattaatcgtaacccaagttatcaaaataaggaatgtgggcccaat |
54607705 |
T |
|
| Q |
373 |
attagttatataacaggagaagagagggnnnnnnn----cattggctttttctgctagggcttaatagcagcaacaaattaaccgaaacccttcttcgat |
468 |
Q |
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| T |
54607704 |
attagttatataacaggagaagagagagggaaaaaaaaacattggctttttctgctagggcttaacagcagcagcaaattaaccgaaacccttcttcgat |
54607605 |
T |
|
| Q |
469 |
tgagatgggagnnnnnnncagtatctagtctattgagtgcggcagtgtagggttttcggttcagattgagaggaaggaagaagatggcaaaaacaagtgt |
568 |
Q |
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| T |
54607604 |
tgagatgggagaaaaaaacagtatctagtctattgagtgcggcagtgtagggttttcggttcagattgagaggaaggaagaagatggcaaaaacaagtgt |
54607505 |
T |
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| Q |
569 |
taatcgatatatggatatggacttataagacgtggtagacgtaagtgtgatgtgtctttgttggaggtgaactattatgtttctcattctcaactcgtta |
668 |
Q |
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| T |
54607504 |
taaccaatatatggatatggac---taagacgtggtagacgtaagtgtgatgtgtctttgttggaggtgaactattatgtttcttattctcaactcgtta |
54607408 |
T |
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| Q |
669 |
actgttccacttctattgatgttgatgctgatgcttctgttaagac-----gaccaaggctcgaaggaaa--------tacgttaggtggtgctaggnnn |
755 |
Q |
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| T |
54607407 |
actgttccacttcta------ctgatgctgatgcttctgttaagacggccaggccaaggctcgaaggaaaagaggaactacgttaggtggtgctaggaaa |
54607314 |
T |
|
| Q |
756 |
nnnnggacttacacgatttggaggaagagnnnnnnngtcacag----tgagtgagtttgcttatatgtataatatgaggcaatgtcaactactcacggtt |
851 |
Q |
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| T |
54607313 |
aaaaggacttacacgatttggaggaagaaaaaaaaagtcatagtgaatgagtgagtttgcttatatgtataatatgaggcaatgtcaactactcacagtt |
54607214 |
T |
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| Q |
852 |
atagtcttacaagttttaacaa |
873 |
Q |
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| T |
54607213 |
atagtcttacaagttttaacaa |
54607192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 54607922 - 54607821
Alignment:
| Q |
110 |
gaggtgagaaaattacatgaggaagagttgagaagaataatattaaaccgtaaagatagatttgcaacaaaaaggatatcataatatgcattatacaaaa |
209 |
Q |
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| T |
54607922 |
gaggtgagaaaattacatgaggaagagttgagaagaataatattaaaccgtacagatagattt-----------gatatcataatatgcattatacaaaa |
54607834 |
T |
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| Q |
210 |
tatataatcaaat |
222 |
Q |
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| T |
54607833 |
tatataatcaaat |
54607821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 919 - 1052
Target Start/End: Complemental strand, 54606858 - 54606727
Alignment:
| Q |
919 |
gggattgtggttaagggaaggctaattaattagggacatgttttttagggaannnnnnngttgaaggaaatctgttcaaaaaatacacagaaagaataca |
1018 |
Q |
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| T |
54606858 |
gggattgtggttaagggaaggctaa-------gggacatgtttttgagggaatttttttgttgaaggaaatctgttcaaaaaatacacagaaagaataca |
54606766 |
T |
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| Q |
1019 |
acc-----tttgaagccaggtgccaatgtaaaaacattt |
1052 |
Q |
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| T |
54606765 |
acctttaatttgaagccaggtgccaatgtaaaaacattt |
54606727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 54608224 - 54608157
Alignment:
| Q |
1 |
tcaaaatcatttataggtgcaatttacaaaaagagtaacaaataaaaaatagtttttcaatgctaagc |
68 |
Q |
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| T |
54608224 |
tcaaaatcatttataggtgcaatttacaaaaagagtaacaaataaaaaatagtttttcaatgctaagc |
54608157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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