View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11340_low_2 (Length: 896)

Name: NF11340_low_2
Description: NF11340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11340_low_2
NF11340_low_2
[»] chr6 (28 HSPs)
chr6 (363-880)||(31564316-31564843)
chr6 (18-304)||(31564838-31565117)
chr6 (1-215)||(33414574-33414788)
chr6 (218-584)||(33385314-33385670)
chr6 (218-584)||(33259583-33259959)
chr6 (15-215)||(33258215-33258416)
chr6 (621-785)||(33416366-33416536)
chr6 (218-410)||(33416152-33416345)
chr6 (1-190)||(33269547-33269740)
chr6 (45-217)||(33278972-33279139)
chr6 (218-403)||(24631975-24632161)
chr6 (1-215)||(33395058-33395274)
chr6 (111-215)||(33293090-33293194)
chr6 (6-122)||(33384040-33384156)
chr6 (262-444)||(9165228-9165418)
chr6 (742-871)||(33385707-33385837)
chr6 (48-172)||(33280358-33280482)
chr6 (455-561)||(24631864-24631970)
chr6 (373-447)||(29274300-29274376)
chr6 (797-856)||(33281320-33281376)
chr6 (8-52)||(33293034-33293078)
chr6 (169-215)||(28873045-28873091)
chr6 (814-868)||(33416538-33416592)
chr6 (797-856)||(33301947-33302003)
chr6 (478-553)||(281808-281881)
chr6 (263-304)||(33282241-33282282)
chr6 (263-304)||(33398042-33398083)
chr6 (263-304)||(33408952-33408993)
[»] chr2 (7 HSPs)
chr2 (1-215)||(17447760-17447975)
chr2 (739-868)||(17443374-17443503)
chr2 (519-584)||(17443537-17443602)
chr2 (366-447)||(34339039-34339122)
chr2 (374-414)||(3102617-3102657)
chr2 (479-556)||(14299588-14299663)
chr2 (386-447)||(7103554-7103615)
[»] scaffold0428 (7 HSPs)
scaffold0428 (15-215)||(2336-2537)
scaffold0428 (348-584)||(3802-4047)
scaffold0428 (45-217)||(15114-15281)
scaffold0428 (48-172)||(13771-13895)
scaffold0428 (218-304)||(3704-3791)
scaffold0428 (797-856)||(12876-12932)
scaffold0428 (263-304)||(11970-12011)
[»] chr5 (7 HSPs)
chr5 (622-776)||(30653203-30653360)
chr5 (373-495)||(11684346-11684468)
chr5 (449-514)||(30653373-30653438)
chr5 (366-447)||(32059660-32059742)
chr5 (366-410)||(10391269-10391313)
chr5 (503-554)||(11457158-11457209)
chr5 (366-405)||(29115328-29115367)
[»] chr8 (8 HSPs)
chr8 (478-556)||(13000381-13000457)
chr8 (371-439)||(26717178-26717246)
chr8 (375-461)||(5290566-5290649)
chr8 (366-429)||(26716527-26716590)
chr8 (478-556)||(30191098-30191174)
chr8 (413-499)||(10079082-10079168)
chr8 (450-499)||(30389108-30389157)
chr8 (373-447)||(34788498-34788574)
[»] chr3 (6 HSPs)
chr3 (478-554)||(43115093-43115167)
chr3 (366-444)||(38462197-38462277)
chr3 (373-446)||(22232749-22232824)
chr3 (357-439)||(3015928-3016011)
chr3 (478-556)||(37273171-37273247)
chr3 (481-577)||(24624250-24624344)
[»] chr7 (4 HSPs)
chr7 (441-554)||(3468614-3468725)
chr7 (366-447)||(3610811-3610894)
chr7 (374-495)||(26935573-26935696)
chr7 (332-410)||(22388014-22388093)
[»] chr1 (2 HSPs)
chr1 (376-429)||(44207697-44207750)
chr1 (505-556)||(15581316-15581367)
[»] scaffold0024 (1 HSPs)
scaffold0024 (388-461)||(21335-21410)
[»] chr4 (3 HSPs)
chr4 (375-429)||(32920489-32920543)
chr4 (372-439)||(47970240-47970309)
chr4 (389-459)||(55437345-55437415)


Alignment Details
Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 363 - 880
Target Start/End: Complemental strand, 31564843 - 31564316
Alignment:
Q  363 aagataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagctt 462  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| |||||||||||||||    
T  31564843 aagataaacacttatcataaaattgcatatgtataagctatttttataacaagataaaatgaagtcacactgttttcctacaagtgattttcataagctt 31564744  T
Q  463 ttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatg 562  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31564743 ttctagacaacatatggaaataagctgaaaacaacttttgtggacatgtcattagttgtttccattaactcttcgaaacagtctcacaagtgctaatatg 31564644  T
Q  563 actgtataagttcaaatacatcaatccacaagaggcaaaacaatatgagaagatgggcaaaatggaagtataattcattttttctctttt------acat 656  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||      ||||    
T  31564643 agtgtataagttcaaatatatcaatccacaagaggcaaaacaatatgaaaagatgggcaaaatggaagtataattaattttttctcttttacatttacat 31564544  T
Q  657 gtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaac----agcaaataagatga 752  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||    
T  31564543 gtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaacattaagcaaataagatga 31564444  T
Q  753 aattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttc 852  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564443 aattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttc 31564344  T
Q  853 ttcatcttcaacttgtactaccacaggt 880  Q
    ||||||||||||||||||||||||||||    
T  31564343 ttcatcttcaacttgtactaccacaggt 31564316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 31565117 - 31564838
Alignment:
Q  18 tgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgt 117  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatcgt 31565018  T
Q  118 gaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 217  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565017 gaatgtatgtaccgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 31564918  T
Q  218 caagtgttggtgatatagttgctgcaattcaaaggggacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagata 304  Q
     ||||||||||       |||||||||| ||||||||   ||||||||||||||||| || ||| |||||||||||||| |||||||    
T  31564917 taagtgttggt-------ttgctgcaatccaaagggggtggaatagacatttaaaaaatagaaatcttatgtaagaatttaaagata 31564838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 33414574 - 33414788
Alignment:
Q  1 gtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaac 100  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| || | ||||||||||||||| |||||||||||||||||    
T  33414574 gtggacaagcagcaacttgcattgcaagatcatcaaccaactccttgaatttctcacttctgccaacaaagtccgtttcacagttcacttcaattagaac 33414673  T
Q  101 actaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtat 200  Q
    || |||  ||| |||||||||||||||| ||||||||||||||||  || |||||||||||||||| ||||||||||||||||||||||| ||||| |||    
T  33414674 accaatacgtgcatcgtgaatgtatgtaccgattcttccttcagctgctagtcttccggatttcttatcagcggatgagagaccctttttcctgagatat 33414773  T
Q  201 gcttgcgccttttca 215  Q
    |||||||||||||||    
T  33414774 gcttgcgccttttca 33414788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 218 - 584
Target Start/End: Original strand, 33385314 - 33385670
Alignment:
Q  218 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 316  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| ||||||||||  |||| ||| ||||||||||||||||||||||||||||||||||    
T  33385314 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacgattagaaatcttatgtaagaattcaaagataggtgaacaggct 33385413  T
Q  317 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa-- 414  Q
     |||| ||||||           |||| | |||||| ||| |||| ||||||| |||||  |||| || |||| |||||||||| ||||||||| |||      
T  33385414 ggaaacctaaga-----------taaacagcctaatgaaaacttataagataagcactttacatataagtgctgatgtataagcaatttttataacaaaa 33385502  T
Q  415 gataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcat 514  Q
    |||||||||||||||||||  | | |||||||| |||||||||||||||||||||||   || ||||| |||||||||||||||||| ||||||||||||    
T  33385503 gataaaatgaagtcatact--tatgctataagctattttcataagcttttctagacagtttatggaaaaaagctgaaaacaacttttatggacatgtcat 33385600  T
Q  515 tggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 584  Q
      | ||||||||| |||||||| ||||||| ||||||||||| |||| | |  |||||||||||| ||||    
T  33385601 gagctgtttccataaactcttccaaacagtttcacaagtgcttatatcagtagataagttcaaatgcatc 33385670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 218 - 584
Target Start/End: Original strand, 33259583 - 33259959
Alignment:
Q  218 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 316  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| || || ||| |||||||||||||||||||||| || |  |||||    
T  33259583 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaactataaatcttatgtaagaattcaaagatatgtaagaaggct 33259682  T
Q  317 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagc--aa 414  Q
     |||| ||||||| | ||||||||||| | ||||||| ||||||| |||||||   |||  |||| || ||||||||||||||||||||||||| |  ||    
T  33259683 ggaaacctaagaccttgtttggataaacagcctaattcaagcttataagataagagctttacatataagtgcttatgtataagctatttttataacaaaa 33259782  T
Q  415 gataaaatgaagtcatactgttttc-------ctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggac 507  Q
    |||||| ||||||||||||||||||       |||||||| ||||||||||||||||||| |||  ||| | |||   |||||||||| ||||| |||||    
T  33259783 gataaattgaagtcatactgttttcctatatgctataagctattttcataagcttttctatacagtatatgtaaaatggctgaaaacagcttttatggac 33259882  T
Q  508 atgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 584  Q
    |||||||| |  |||||||| |||||||| ||||||| |  |||||||| |||| | | ||||||||||||||||||    
T  33259883 atgtcattagccgtttccataaactcttccaaacagtttggcaagtgcttatatcaatatataagttcaaatacatc 33259959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 33258215 - 33258416
Alignment:
Q  15 acttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaat 114  Q
    ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  ||||||||||||||||||| |||||||||||    
T  33258215 acttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaat 33258314  T
Q  115 cgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgcctttt 213  Q
    || || || |||||| |||||||||||||  |  || |||| ||||||||||| |||||||||||||||||||||||  |||| |||||||||| |||||    
T  33258315 cgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggctttt 33258414  T
Q  214 ca 215  Q
    ||    
T  33258415 ca 33258416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 621 - 785
Target Start/End: Original strand, 33416366 - 33416536
Alignment:
Q  621 aaaatggaagtataat--tcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgt 718  Q
    |||||||||||||| |  || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |    
T  33416366 aaaatggaagtatattcatcttttcttctcttttacatgtaaaaactgaaatacatgtataaattcaaatctgtccaacatatttacttctatttgatat 33416465  T
Q  719 agaaaaattagaatagaaa----cagcaaataagatgaaattgaaaccattactcgagcctttgtctgaag 785  Q
    |||||||| ||||| ||||     ||||||||||||||||| |||||| |||||||||||||  |||||||    
T  33416466 agaaaaatgagaattgaaatatgaagcaaataagatgaaatggaaacctttactcgagccttcatctgaag 33416536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 218 - 410
Target Start/End: Original strand, 33416152 - 33416345
Alignment:
Q  218 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 316  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| ||||| ||  ||||  ||| ||||||||||||||||||||| ||    
T  33416152 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaattagaagtcttaactaaaaattcaaagataggtgaacagact 33416251  T
Q  317 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttata 410  Q
    ||||||| | ||| | ||||||||||| ||||||||||||||||| ||||||| | || || || ||| |||||||||||||||||||||||||    
T  33416252 agaaaaccatgaccttgtttggataaacaacctaattaaagcttataagataagcgctcattatcaaagtgcttatgtataagctatttttata 33416345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 33269547 - 33269740
Alignment:
Q  1 gtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaac 100  Q
    ||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| || | |||||| |||||||| |||||||||||||||||    
T  33269547 gtggacaagcagcaacttgcattgcaagatcatcaaccaacttcttgaatttctcacttctgccaacaaagtcggtttcacagttcacttcaattagaac 33269646  T
Q  101 actaatgtgtgaatcgtgaatg----tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttt 190  Q
    ||  |||  || || |||||||    |||||| |||||||| |||||||  || ||||| | || ||||| |||||||||||||||||||||||    
T  33269647 accgatgcatgcattgtgaatgtatatatgtaccgattctttcttcagctgctagtcttgcagacttcttatcagcggatgagagacccttttt 33269740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 45 - 217
Target Start/End: Original strand, 33278972 - 33279139
Alignment:
Q  45 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcag 144  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||    
T  33278972 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctttag 33279071  T
Q  145 caactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 217  Q
     | ||    | ||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||    
T  33279072 tagct----tgccggatttcttgtcagctgataagagaccc-tttttctaaggtatgcttgcgccttttcatg 33279139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 218 - 403
Target Start/End: Complemental strand, 24632161 - 24631975
Alignment:
Q  218 caagtgttggtgatatagttgctgcaattcaaagggga-cagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 316  Q
    |||||| |||||||| |||||||||||| ||||  ||| ||||| |||||||||| ||||| ||| |||||||| |||||||||||| |||||||| | |    
T  24632161 caagtgctggtgataaagttgctgcaatccaaacaggagcagaacagacatttaacaattagaaatcttatgtaggaattcaaagattggtgaacaagtt 24632062  T
Q  317 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctat 403  Q
     |||||||||||| | ||||||||||  ||| ||||||||  ||| ||||||||| ||||||||| || |||||||| |||||||||    
T  24632061 ggaaaactaagacctcgtttggataagcaacttaattaaatattataagataaacgcttatcatataagtgcttatgcataagctat 24631975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 33395058 - 33395274
Alignment:
Q  1 gtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttcta--ccgataaagtccgtttcacatttcacttcaattaga 98  Q
    |||||||||||||   |||||||| |||||||  ||| |||||||||||| | ||||||||   || | |||||| |||||||| ||||||||||| |||    
T  33395058 gtggacaagcagcctattgcattgaaagatcagcaaccaactccttgaatctatcacttctgtgccaacaaagtcggtttcacagttcacttcaatcaga 33395157  T
Q  99 acactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggt 198  Q
    |||   ||| ||| ||||| ||||||| || ||||||||||||||||  || | || ||||||||||||||||| ||||||||||||||| |||| ||||    
T  33395158 acatagatgcgtgcatcgtcaatgtatttaccgattcttccttcagctgctagcctaccggatttcttgtcagctgatgagagaccctttgttctaaggt 33395257  T
Q  199 atgcttgcgccttttca 215  Q
    ||| ||| |||||||||    
T  33395258 atgattgggccttttca 33395274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 33293090 - 33293194
Alignment:
Q  111 gaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgcct 210  Q
    |||||||||||||||||| | ||||||||||||||  || |||||| ||||||||| |||||| |||||||||||||||||||||||||||||| | |||    
T  33293090 gaatcgtgaatgtatgtaccaattcttccttcagctgctagtcttctggatttcttatcagcgaatgagagacccttttttctgaggtatgctttcacct 33293189  T
Q  211 tttca 215  Q
    |||||    
T  33293190 tttca 33293194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 33384040 - 33384156
Alignment:
Q  6 caagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaa 105  Q
    |||||||| ||||||||||||||||||| ||| |||||||| | |||||||||||| |||| |||||| |||| ||| |||||||||||||||||||  |    
T  33384040 caagcagccacttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcggtttgacagttcacttcaattagaacaccga 33384139  T
Q  106 tgtgtgaatcgtgaatg 122  Q
    ||||||||| |||||||    
T  33384140 tgtgtgaatagtgaatg 33384156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 262 - 444
Target Start/End: Original strand, 9165228 - 9165418
Alignment:
Q  262 agacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggctagaaaactaagactta-------gtttggataaataacctaatta 354  Q
    |||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||  ||| ||| ||  ||       |||||||||||   ||||||||    
T  9165228 agacatttaacaattagaaatcttatgtaaaaattcaaagataggtgaacaggctgcaaacctatgagctatgaccttgtttggataaacgccctaatta 9165327  T
Q  355 aagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaaga--taaaatgaagtcatactgttttcctata 444  Q
    ||||||| |||||||   |||| |||| || | ||||||||||||||||||||||| ||| |  ||| ||||||||||||||||||||||||    
T  9165328 aagcttataagataagtgctta-catataagtacttatgtataagctatttttataacaaaaggtaagatgaagtcatactgttttcctata 9165418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 742 - 871
Target Start/End: Original strand, 33385707 - 33385837
Alignment:
Q  742 aaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttg-tctcggatgc 840  Q
    |||||||||||||||| |||| || ||| ||||||  ||||| |  ||||| ||||||||||||||||| ||||||| | ||||||||| | |   ||||    
T  33385707 aaataagatgaaattgcaacctttgctcaagccttcatctgacgctgtaattccggtttgtccattagagttagatacgctgttgtttgttttttaatgc 33385806  T
Q  841 aattgcaacttcttcatcttcaacttgtact 871  Q
    |||||||||||||||| ||||||||||||||    
T  33385807 aattgcaacttcttcaccttcaacttgtact 33385837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 33280358 - 33280482
Alignment:
Q  48 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 147  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  33280358 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 33280457  T
Q  148 ctcgtcttccggatttcttgtcagc 172  Q
     |  |||||||||||||||||||||    
T  33280458 ttaatcttccggatttcttgtcagc 33280482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 455 - 561
Target Start/End: Complemental strand, 24631970 - 24631864
Alignment:
Q  455 ataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 554  Q
    ||||||||||||| ||| | |  ||||||||||| |||||| ||||| ||||||| ||||  ||||||||||| |||||||| ||| ||| |||||||||    
T  24631970 ataagcttttctaaacagcttttggaaataagctaaaaacagcttttatggacatatcatgagttgtttccataaactcttccaaatagtttcacaagtg 24631871  T
Q  555 ctaatat 561  Q
    || ||||    
T  24631870 cttatat 24631864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 373 - 447
Target Start/End: Complemental strand, 29274376 - 29274300
Alignment:
Q  373 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 447  Q
    ||||||||| || |||||||||||||||||||| ||||||  |||||||||| |||||| | ||||||| |||||||    
T  29274376 cttatcatagaaatgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagc 29274300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 797 - 856
Target Start/End: Original strand, 33281320 - 33281376
Alignment:
Q  797 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 856  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  33281320 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 33281376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 33293034 - 33293078
Alignment:
Q  8 agcagcaacttgcattgcaagatcatgaacaaactccttgaattt 52  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||    
T  33293034 agcagcaacttgcattgcaagatcattaaccaactccttgaattt 33293078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 28873091 - 28873045
Alignment:
Q  169 cagcggatgagagacccttttttctgaggtatgcttgcgccttttca 215  Q
    |||| |||||||||||||||| |||||||||||||| ||||||||||    
T  28873091 cagcagatgagagacccttttatctgaggtatgcttacgccttttca 28873045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 814 - 868
Target Start/End: Original strand, 33416538 - 33416592
Alignment:
Q  814 agataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgt 868  Q
    |||||||||| ||||||| || ||||||||||||||  |||||||||||||||||    
T  33416538 agataagttgctgtttgtttcagatgcaattgcaaccgcttcatcttcaacttgt 33416592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 797 - 856
Target Start/End: Original strand, 33301947 - 33302003
Alignment:
Q  797 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 856  Q
    ||||||||||||||||||||||   || ||||||||||||||||||| ||||| ||||||    
T  33301947 gtttgtccattagaattagata---tgatgtttgtctcggatgcaatagcaacctcttca 33302003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 478 - 553
Target Start/End: Complemental strand, 281881 - 281808
Alignment:
Q  478 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagt 553  Q
    |||||||||||||||||||||| |   ||||||||||  |||| |||||||| |||| | ||||||||||||||||    
T  281881 ggaaataagctgaaaacaacttata--gacatgtcataagttgcttccattagctctcccaaacagtctcacaagt 281808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 33282241 - 33282282
Alignment:
Q  263 gacatttaaaaattacaaaccttatgtaagaattcaaagata 304  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33282241 gacatttaaaaattagaaatcttatgtaagaattcaacgata 33282282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 33398042 - 33398083
Alignment:
Q  263 gacatttaaaaattacaaaccttatgtaagaattcaaagata 304  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33398042 gacatttaaaaattataaatcttatgtaagaattcaacgata 33398083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 33408952 - 33408993
Alignment:
Q  263 gacatttaaaaattacaaaccttatgtaagaattcaaagata 304  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33408952 gacatttaaaaattataaatcttatgtaagaattcaacgata 33408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 4e-56; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 17447975 - 17447760
Alignment:
Q  1 gtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaac 100  Q
    ||||| ||||||| ||||||||||||||||||| ||| |||||||||||| |||| ||||| || | |||||| |||||| | |||| |||||||||| |    
T  17447975 gtggaaaagcagccacttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaattagacc 17447876  T
Q  101 actaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagaga-cccttttttctgaggta 199  Q
    ||  ||| ||| |||||||||||||||| ||||||||||||||||  |  |||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  17447875 accgatgcgtgcatcgtgaatgtatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatgagagaccccttttttctgaggta 17447776  T
Q  200 tgcttgcgccttttca 215  Q
    ||||||||||||||||    
T  17447775 tgcttgcgccttttca 17447760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 739 - 868
Target Start/End: Complemental strand, 17443503 - 17443374
Alignment:
Q  739 agcaaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggat 838  Q
    ||||||||||||||||||| |||| ||  || ||||||  |||||||  ||||||| ||||||||||||||| ||||||| |   |||||||| ||  ||    
T  17443503 agcaaataagatgaaattgcaacctttggtcaagccttcatctgaagctgtaatgctggtttgtccattagagttagatacgccattgtttgtttcaaat 17443404  T
Q  839 gcaattgcaacttcttcatcttcaacttgt 868  Q
    ||||||||||||||||||  ||||||||||    
T  17443403 gcaattgcaacttcttcacgttcaacttgt 17443374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 519 - 584
Target Start/End: Complemental strand, 17443602 - 17443537
Alignment:
Q  519 tgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 584  Q
    ||||||||| |||||||| ||||||||||||||||||| |||| | | ||||||||||||||||||    
T  17443602 tgtttccataaactcttccaaacagtctcacaagtgcttatatcagtatataagttcaaatacatc 17443537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 366 - 447
Target Start/End: Original strand, 34339039 - 34339122
Alignment:
Q  366 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 447  Q
    |||||||||||||||| || ||||||||||||| || ||| ||||||  |||||||||| |||||| ||||||||| |||||||    
T  34339039 ataaacacttatcatataagtgcttatgtataaactttttctatagctaaagataaaataaagtcagactgttttcgtataagc 34339122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 3102617 - 3102657
Alignment:
Q  374 ttatcataaaattgcttatgtataagctatttttatagcaa 414  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  3102617 ttatcatataactgcttatgtataagctatttttatagcaa 3102657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 479 - 556
Target Start/End: Complemental strand, 14299663 - 14299588
Alignment:
Q  479 gaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 556  Q
    ||||||||||||||||||  | | |||| |||||||  ||||||||||| |||||||| |||||||| | ||||||||    
T  14299663 gaaataagctgaaaacaa--tgtatggatatgtcataagttgtttccataaactcttccaaacagtccctcaagtgct 14299588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 447
Target Start/End: Complemental strand, 7103615 - 7103554
Alignment:
Q  386 tgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagc 447  Q
    |||||||||| || |||| |||||| ||||||||||| |||||| ||||||||  |||||||    
T  7103615 tgcttatgtagaaactatatttataacaagataaaataaagtcaaactgttttaatataagc 7103554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 94; Significance: 2e-45; HSPs: 7)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 2336 - 2537
Alignment:
Q  15 acttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaat 114  Q
    ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  ||||||||||||||||||| |||||||||||    
T  2336 acttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaat 2435  T
Q  115 cgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgcctttt 213  Q
    || || || |||||| |||||||||||||  |  || |||| ||||||||||| |||||||||||||||||||||||  |||| |||||||||| |||||    
T  2436 cgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggctttt 2535  T
Q  214 ca 215  Q
    ||    
T  2536 ca 2537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 348 - 584
Target Start/End: Original strand, 3802 - 4047
Alignment:
Q  348 ctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctata- 444  Q
    |||||| ||||||| ||||||| | |||  |||| || ||||||||| ||||||||||||||| |||  |||||| |||||||||||||||||||||||     
T  3802 ctaattcaagcttataagataagcgctttacatataagtgcttatgtgtaagctatttttataacaaaagataaactgaagtcatactgttttcctatat 3901  T
Q  445 ------agcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcga 538  Q
          ||| |||||||||||||||||||||||  ||| | |||   |||||||||| ||||| ||||||||||||  |  |||||||| |||||||| |    
T  3902 gctataagctattttcataagcttttctagacagtatatgtaaaatggctgaaaacagcttttatggacatgtcatgagccgtttccataaactcttcca 4001  T
Q  539 aacagtctcacaagtgctaatatgactgtataagttcaaatacatc 584  Q
    |||||||||||||||||| |||| | | ||||||||||||||||||    
T  4002 aacagtctcacaagtgcttatatcaatatataagttcaaatacatc 4047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 45 - 217
Target Start/End: Complemental strand, 15281 - 15114
Alignment:
Q  45 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcag 144  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||    
T  15281 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctttag 15182  T
Q  145 caactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 217  Q
     | ||    | ||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||    
T  15181 tagct----tgccggatttcttgtcagctgataagagaccc-tttttctaaggtatgcttgcgccttttcatg 15114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 13895 - 13771
Alignment:
Q  48 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 147  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  13895 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 13796  T
Q  148 ctcgtcttccggatttcttgtcagc 172  Q
     |  |||||||||||||||||||||    
T  13795 ttaatcttccggatttcttgtcagc 13771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 218 - 304
Target Start/End: Original strand, 3704 - 3791
Alignment:
Q  218 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagata 304  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| || || ||| ||||||||||||||||||||||    
T  3704 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaactataaatcttatgtaagaattcaaagata 3791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 797 - 856
Target Start/End: Complemental strand, 12932 - 12876
Alignment:
Q  797 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 856  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  12932 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 12876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 12011 - 11970
Alignment:
Q  263 gacatttaaaaattacaaaccttatgtaagaattcaaagata 304  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  12011 gacatttaaaaattagaaatcttatgtaagaattcaacgata 11970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 5e-43; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 622 - 776
Target Start/End: Complemental strand, 30653360 - 30653203
Alignment:
Q  622 aaatggaagtataattcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtaga 721  Q
    |||||||||||||||| |||||||||||||||||||||||||  |||| |||||||||| ||||||||||||||||||| |||||| | |||||||| ||    
T  30653360 aaatggaagtataatttattttttctcttttacatgtaaaaaccgaaagacatgtataagttcaaatctgtctaacataattactt-tgttagatgttga 30653262  T
Q  722 aaaattagaatagaaaca----gcaaataagatgaaattgaaaccattactcgagcctt 776  Q
    ||||||||||||||||||    |||||||||||||||||  |||| |||||||||||||    
T  30653261 aaaattagaatagaaacatgacgcaaataagatgaaattttaacctttactcgagcctt 30653203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 373 - 495
Target Start/End: Original strand, 11684346 - 11684468
Alignment:
Q  373 cttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaa 472  Q
    ||||||||| || |||| |||||||||||||||||||| ||| ||| ||   ||| | ||||||||| ||||||| ||||||||||||| | || || |     
T  11684346 cttatcatataagtgctaatgtataagctatttttataacaaaatataaaatagtgaaactgttttcatataagctattttcataagctatgctggagag 11684445  T
Q  473 catacggaaataagctgaaaaca 495  Q
    | |||||||||||| ||||||||    
T  11684446 cttacggaaataagttgaaaaca 11684468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 449 - 514
Target Start/End: Complemental strand, 30653438 - 30653373
Alignment:
Q  449 attttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcat 514  Q
    ||||||||||||||||||||||| | || |||||||||||||||||| ||||| || |||||||||    
T  30653438 attttcataagcttttctagacagcttatggaaataagctgaaaacagcttttatgaacatgtcat 30653373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 366 - 447
Target Start/End: Complemental strand, 32059742 - 32059660
Alignment:
Q  366 ataaacacttatcataaaattgcttatgtataagctatttttatagc-aagataaaatgaagtcatactgttttcctataagc 447  Q
    ||||| |||||||||| || |||||||||||||||| ||||| || | |||||||||| |||||| ||||||||| |||||||    
T  32059742 ataaatacttatcatataagtgcttatgtataagctgtttttgtaactaagataaaataaagtcaaactgttttcatataagc 32059660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 366 - 410
Target Start/End: Original strand, 10391269 - 10391313
Alignment:
Q  366 ataaacacttatcataaaattgcttatgtataagctatttttata 410  Q
    |||||||||||||||| || |||||| ||||||||||||||||||    
T  10391269 ataaacacttatcatataagtgcttacgtataagctatttttata 10391313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 503 - 554
Target Start/End: Original strand, 11457158 - 11457209
Alignment:
Q  503 tggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 554  Q
    ||||||||||||  ||||||||||| | |||||| |||||||||||||||||    
T  11457158 tggacatgtcataagttgtttccataagctcttcaaaacagtctcacaagtg 11457209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 366 - 405
Target Start/End: Complemental strand, 29115367 - 29115328
Alignment:
Q  366 ataaacacttatcataaaattgcttatgtataagctattt 405  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  29115367 ataaacatttatcataaaagtgcttatgtataagctattt 29115328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 478 - 556
Target Start/End: Complemental strand, 13000457 - 13000381
Alignment:
Q  478 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 556  Q
    ||||||||||||||||||||||  |||||||||||||  |||||| |||| |||||||  ||| |||||||||||||||    
T  13000457 ggaaataagctgaaaacaactt--gtggacatgtcataagttgttaccataaactcttgcaaatagtctcacaagtgct 13000381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 371 - 439
Target Start/End: Original strand, 26717178 - 26717246
Alignment:
Q  371 cacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttc 439  Q
    ||||||||||| || ||||| || |||||||| ||||||| ||||||||||| |||||| ||| |||||    
T  26717178 cacttatcatataagtgcttctgaataagctaattttataacaagataaaataaagtcaaactattttc 26717246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 461
Target Start/End: Original strand, 5290566 - 5290649
Alignment:
Q  375 tatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagct 461  Q
    ||||||| || |||||||||||||||||||| |||| ||| |||||||  ||||| ||||||||| | ||||| || ||||||||||    
T  5290566 tatcatacaagtgcttatgtataagctatttctataacaa-ataaaat--agtcaaactgttttcatgtaagctatattcataagct 5290649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 366 - 429
Target Start/End: Complemental strand, 26716590 - 26716527
Alignment:
Q  366 ataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 429  Q
    |||||||||||| ||| || ||||||||||||||||| || |||| |||||| |||| ||||||    
T  26716590 ataaacacttattatataagtgcttatgtataagctacttctataacaagattaaataaagtca 26716527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 478 - 556
Target Start/End: Complemental strand, 30191174 - 30191098
Alignment:
Q  478 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 556  Q
    ||||||||||||||||||| |||||   |||||||||  ||||||||||| | |||| | ||||||||| |||||||||    
T  30191174 ggaaataagctgaaaacaagttttga--acatgtcataagttgtttccataagctctcccaaacagtctaacaagtgct 30191098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 413 - 499
Target Start/End: Complemental strand, 10079168 - 10079082
Alignment:
Q  413 aagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaactt 499  Q
    ||||||||||||||||| ||||||||| |||||||  ||||||| |||| |||| || |   || ||||| ||||| ||||||||||    
T  10079168 aagataaaatgaagtcaaactgttttcgtataagctgttttcatgagctattctggaaagtttatggaaagaagcttaaaacaactt 10079082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 450 - 499
Target Start/End: Original strand, 30389108 - 30389157
Alignment:
Q  450 ttttcataagcttttctagacaacatacggaaataagctgaaaacaactt 499  Q
    |||||||||||||| ||||| ||| || | ||||||||||||||||||||    
T  30389108 ttttcataagctttcctagagaacttatgaaaataagctgaaaacaactt 30389157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 373 - 447
Target Start/End: Complemental strand, 34788574 - 34788498
Alignment:
Q  373 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 447  Q
    ||||||||| || |||||| |||||||||||||||||  |  |||||||||| |||||| ||||||| | |||||||    
T  34788574 cttatcatataaatgcttacgtataagctatttttatgaccaaagataaaataaagtcaaactgtttccatataagc 34788498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 478 - 554
Target Start/End: Original strand, 43115093 - 43115167
Alignment:
Q  478 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 554  Q
    ||||||||||||||||||| || ||  ||||||||||  ||||||||||| |||||||| ||||| |||||||||||    
T  43115093 ggaaataagctgaaaacaagttatg--gacatgtcataagttgtttccataaactcttccaaacaatctcacaagtg 43115167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 444
Target Start/End: Original strand, 38462197 - 38462277
Alignment:
Q  366 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctata 444  Q
    |||||||||||||||| || || |||| |||||||||||| |||| |  |||||||||| |||||| ||||||||| ||||    
T  38462197 ataaacacttatcatataagtgtttatttataagctatttctataccaaaagataaaataaagtcaaactgttttcatata 38462277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 373 - 446
Target Start/End: Original strand, 22232749 - 22232824
Alignment:
Q  373 cttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataag 446  Q
    ||||||||| || |||| ||||||||||||||| |||| |||  |||||||| |||||| ||||||||| ||||||    
T  22232749 cttatcatataaatgctcatgtataagctatttatataacaaatgataaaataaagtcaaactgttttcatataag 22232824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 357 - 439
Target Start/End: Complemental strand, 3016011 - 3015928
Alignment:
Q  357 gcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa-gataaaatgaagtcatactgttttc 439  Q
    ||||| || |||||||||||| ||| || ||||||||||| |  ||||| |||| ||| ||||||||||||||| |||||||||    
T  3016011 gcttataacataaacacttattatataagtgcttatgtattaattatttctataacaaagataaaatgaagtcaaactgttttc 3015928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 478 - 556
Target Start/End: Original strand, 37273171 - 37273247
Alignment:
Q  478 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 556  Q
    ||||||||| |||||||||||| ||  ||||||||||  ||||||||||| | |||| | |||||||||||| ||||||    
T  37273171 ggaaataagttgaaaacaacttatg--gacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgct 37273247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 577
Target Start/End: Original strand, 24624250 - 24624344
Alignment:
Q  481 aataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaa 577  Q
    |||||||||||||||   ||| ||||||||||||  | ||||| ||| | |||||| ||||||||| |||||||||||| ||| |  ||||||||||    
T  24624250 aataagctgaaaacag--tttatggacatgtcataagctgttttcataagctcttccaaacagtcttacaagtgctaatgtgagtagataagttcaa 24624344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 441 - 554
Target Start/End: Original strand, 3468614 - 3468725
Alignment:
Q  441 tataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaa 540  Q
    |||||||  ||||||||| || | ||||| ||| |  ||||||||| || ||||||||| ||  ||||||||||| ||||||||||  |||||| |||||    
T  3468614 tataagcttttttcataatctatcctagagaacttgtggaaataagttggaaacaacttatg--gacatgtcattagttgtttccaacaactctccgaaa 3468711  T
Q  541 cagtctcacaagtg 554  Q
    |||||||| |||||    
T  3468712 cagtctcaaaagtg 3468725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 366 - 447
Target Start/End: Complemental strand, 3610894 - 3610811
Alignment:
Q  366 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 447  Q
    |||||||||| ||||| || |||||||||||||||||||| || | |  |||||||||||||| || ||||||||  |||||||    
T  3610894 ataaacacttgtcatataagtgcttatgtataagctatttctacaacaaaagataaaatgaaggcaaactgttttggtataagc 3610811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 374 - 495
Target Start/End: Complemental strand, 26935696 - 26935573
Alignment:
Q  374 ttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagaca 471  Q
    |||||||| || ||||| ||| ||||||||||||||| |||  |||||||| | || | | ||||||| ||| ||| |||||||||| || ||||| | |    
T  26935696 ttatcatataagtgcttttgtgtaagctatttttataacaaatgataaaataaggttaaattgttttcatatgagctattttcataatctattctaaaga 26935597  T
Q  472 acatacggaaataagctgaaaaca 495  Q
     | || ||||||||||||||||||    
T  26935596 gcttatggaaataagctgaaaaca 26935573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 332 - 410
Target Start/End: Complemental strand, 22388093 - 22388014
Alignment:
Q  332 agtttggataaataacctaattaaa-gcttacaagataaacacttatcataaaattgcttatgtataagctatttttata 410  Q
    |||||||||||| ||| |||||||  ||||| || |||||||||||||||  || |||||||| ||||||||||| ||||    
T  22388093 agtttggataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatggataagctatttctata 22388014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 376 - 429
Target Start/End: Original strand, 44207697 - 44207750
Alignment:
Q  376 atcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 429  Q
    |||||| || ||||||| | ||||||||||||||||||||||||||| ||||||    
T  44207697 atcatacaagtgcttatatgtaagctatttttatagcaagataaaataaagtca 44207750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 505 - 556
Target Start/End: Original strand, 15581316 - 15581367
Alignment:
Q  505 gacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 556  Q
    ||||||||||  ||||||||||||| |||||| ||||| |||||||||||||    
T  15581316 gacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgct 15581367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 388 - 461
Target Start/End: Complemental strand, 21410 - 21335
Alignment:
Q  388 cttatgtataagctatttttatag--caagataaaatgaagtcatactgttttcctataagcgattttcataagct 461  Q
    ||||||||||||||||||||||||   |||||||||| |||| | | ||||||| |||||||  ||||||||||||    
T  21410 cttatgtataagctatttttataggaaaagataaaataaagttaaattgttttcgtataagctgttttcataagct 21335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 375 - 429
Target Start/End: Complemental strand, 32920543 - 32920489
Alignment:
Q  375 tatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 429  Q
    ||||||| || || ||||| |||||||||||||||| ||||||||||| ||||||    
T  32920543 tatcatataagtgtttatggataagctatttttataacaagataaaataaagtca 32920489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 439
Target Start/End: Original strand, 47970240 - 47970309
Alignment:
Q  372 acttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttc 439  Q
    |||| ||||| || |||||||||||||||||||| |||| |  ||||||||||||||||| ||| |||||    
T  47970240 acttgtcatataagtgcttatgtataagctatttctataacaaaagataaaatgaagtcaaactattttc 47970309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 389 - 459
Target Start/End: Complemental strand, 55437415 - 55437345
Alignment:
Q  389 ttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataag 459  Q
    |||| |||||||||||| |||| ||| ||||||| |||||| | | ||||| ||||||| |||||||||||    
T  55437415 ttatctataagctatttctataacaatataaaataaagtcaaattattttcatataagctattttcataag 55437345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University