View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11340_low_3 (Length: 629)
Name: NF11340_low_3
Description: NF11340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11340_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 572; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 17 - 612
Target Start/End: Complemental strand, 43763476 - 43762881
Alignment:
| Q |
17 |
acatcattgagaacacaccaggcaatcctgttattattgaaggactaaaagcaatttttagcgtaacatattcagatttcagcatttttataaaccaaat |
116 |
Q |
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| T |
43763476 |
acataattgagaacacaccaggcaatcctgttattattgaaggactaaaagcaatttttagcgtaacatattcagatttcagcatttttataaaccaaat |
43763377 |
T |
|
| Q |
117 |
ttcactcagagtgtcttaagtcagtttcaatcagtgtgaactggtttcaacttaataaagcgattatatattttgatgaactactaattgaatactacca |
216 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43763376 |
ttcaatcagagtgtcttaattcagtttcaatcagtgtgaactggtttcaacttaataaagcgattatatattttgatgaactactaattgaatactacca |
43763277 |
T |
|
| Q |
217 |
tactcgcgagcaagagaaattaacttgccgagtactcctctgaatcatagtaacagccaaatattgtacttgcactggaacgatttaaggagaaagaata |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43763276 |
tactcgcgagcaagagaaattaacttgccgagtactcctctgaatcatagtaacagccaaatattgtacttgcactggaacgatttaaggaaaaagaata |
43763177 |
T |
|
| Q |
317 |
atcatatttatttcaaacgccattttgcaccagttatacaagagatactgttacaaatatatcatgaaaatgcaccctaaaaaagcaataaaatgaaaat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43763176 |
atcatatttatttcaaacgccattttgcaccagttatacaagagatactgttacaaatatatcatgaaaatgcaccctaaaaaagcaataaaatgaaaat |
43763077 |
T |
|
| Q |
417 |
acttgctcctcttatcggatcgcataaacaacacctgtcttccaagcagacgaatttggctcttcaatattgcctctatatggtattactcttaaaagag |
516 |
Q |
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| T |
43763076 |
acttactcctcttatcggatcgcataaacaacacctgtcttccaagcagacgaatttggctcttcaatattgcatctatatggtattactcttaaaagag |
43762977 |
T |
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| Q |
517 |
ctgatttcaatttcaacccactaatataattcccctatctcctgcataattcctcttagattcctacataccaggcataagaagaaacaaggaaat |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43762976 |
ctgatttcaatttcaacccactaatataattcccctatctcctgcataattcctcttagattcctacataccaggcataagaagaaacaaggaaat |
43762881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 468 - 581
Target Start/End: Complemental strand, 43757240 - 43757126
Alignment:
| Q |
468 |
gaatttggctcttcaatattgcctctatatggtattactcttaaaa-gagctgatttcaatttcaacccactaatataattcccctatctcctgcataat |
566 |
Q |
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||||||| ||||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||||||||| ||||||||||||| ||||||| |||| | |
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| T |
43757240 |
gaatttgactcttcactattgcctctatatggtattagccttaaaatgagttgatttcaatttcaacccagtaatataattcccttatctccaccatagt |
43757141 |
T |
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| Q |
567 |
tcctcttagattcct |
581 |
Q |
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|| |||||||||||| |
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| T |
43757140 |
tcttcttagattcct |
43757126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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