View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11341_high_3 (Length: 433)
Name: NF11341_high_3
Description: NF11341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11341_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 9 - 433
Target Start/End: Complemental strand, 41141878 - 41141447
Alignment:
| Q |
9 |
gaagcagagaaggagaacccaaattggaccaaatttggggtagaaaatcttccaaccaaggcttctgattcatcaccgtcatcaaaggtgatttttcata |
108 |
Q |
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| T |
41141878 |
gaagcagagaaggagaacccaaattggaccaaatttggggtagaaaatcttccaaccaaggcttctgattcatcaccgtcatcaaaggtgatttttcata |
41141779 |
T |
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| Q |
109 |
atttagagcaagaagttccgatttattctagtttgcgtttatgnnnnnnnnn--ctttctgattcattatgcagatgttgtgacttactatttgcttttt |
206 |
Q |
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| T |
41141778 |
atttagagcaagaagttccgatttattctagtttgcgtttatgtttttttttttctttctgattcattatgcagatgttgtgacttactatttgcttttt |
41141679 |
T |
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| Q |
207 |
catgtttagtacattaattttctgtgtatagataaaattcttctgttgttt-----ccaactcatatggtgtaaaatgaagctatatttgcaggttacta |
301 |
Q |
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| T |
41141678 |
catgtttagtgtattaattttctgtgtatagataaaattcttctgttgtttggtttccaactcatatggtgtaaaatgaaactatatttgcaggttacta |
41141579 |
T |
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| Q |
302 |
ctgcagatccaattgtgaacaaatatatagccatgggactcagccgagacgtagttcctattgctgttaagaattatggtgataatcctaccaaagtatg |
401 |
Q |
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| T |
41141578 |
ctgcagatccaattgtgaacaaatatatagccatgggactcagccgagacgtagttcctattgctgttaagaattatggtgataatcctaccaaagtatg |
41141479 |
T |
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| Q |
402 |
ttctctgttccggtaacttataatgaacatga |
433 |
Q |
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| T |
41141478 |
ttctctgttccggtaacttataatgaacatga |
41141447 |
T |
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