View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11341_low_1 (Length: 610)

Name: NF11341_low_1
Description: NF11341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11341_low_1
NF11341_low_1
[»] chr1 (14 HSPs)
chr1 (1-593)||(50017480-50018079)
chr1 (142-540)||(17431338-17431757)
chr1 (122-196)||(11471317-11471391)
chr1 (463-582)||(11476352-11476470)
chr1 (463-582)||(11504393-11504511)
chr1 (463-593)||(28244541-28244671)
chr1 (117-196)||(11318763-11318842)
chr1 (117-196)||(11476784-11476863)
chr1 (117-198)||(28244189-28244272)
chr1 (142-196)||(17430785-17430839)
chr1 (117-189)||(50027519-50027592)
chr1 (300-345)||(28244380-28244425)
chr1 (392-440)||(28244487-28244534)
chr1 (147-195)||(35534507-35534555)
[»] chr5 (9 HSPs)
chr5 (116-593)||(25483881-25484344)
chr5 (122-198)||(25379443-25379519)
chr5 (147-195)||(10292976-10293024)
chr5 (116-196)||(25384065-25384145)
chr5 (516-593)||(25383685-25383763)
chr5 (299-440)||(25383821-25383957)
chr5 (142-197)||(25482733-25482788)
chr5 (145-195)||(38010630-38010680)
chr5 (142-190)||(23231600-23231649)
[»] chr6 (11 HSPs)
chr6 (117-196)||(10126551-10126630)
chr6 (463-593)||(19306185-19306315)
chr6 (123-197)||(19310336-19310410)
chr6 (117-198)||(10122322-10122403)
chr6 (463-582)||(10122673-10122791)
chr6 (117-197)||(19305841-19305921)
chr6 (341-440)||(19306083-19306178)
chr6 (299-347)||(19306023-19306071)
chr6 (392-440)||(10122619-10122666)
chr6 (147-183)||(34245592-34245628)
chr6 (143-183)||(35006191-35006231)
[»] chr2 (6 HSPs)
chr2 (117-196)||(38255469-38255548)
chr2 (122-195)||(43154097-43154170)
chr2 (463-582)||(38250494-38250612)
chr2 (463-582)||(43158913-43159031)
chr2 (116-195)||(43159350-43159429)
chr2 (116-196)||(38250094-38250174)
[»] chr7 (4 HSPs)
chr7 (142-198)||(22492406-22492462)
chr7 (142-197)||(48944307-48944362)
chr7 (341-593)||(22489492-22489724)
chr7 (117-197)||(22489242-22489322)
[»] chr4 (6 HSPs)
chr4 (143-197)||(54362247-54362301)
chr4 (147-197)||(28166932-28166982)
chr4 (147-197)||(28167591-28167641)
chr4 (142-188)||(48792834-48792880)
chr4 (142-191)||(48796046-48796095)
chr4 (341-385)||(54362557-54362601)
[»] scaffold0464 (1 HSPs)
scaffold0464 (147-181)||(6449-6483)
[»] chr3 (2 HSPs)
chr3 (143-197)||(33862375-33862429)
chr3 (145-195)||(47186280-47186330)


Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 593
Target Start/End: Original strand, 50017480 - 50018079
Alignment:
Q  1 caaatatcatttctctaatttaaactgcaaataggtcttatgtg--gtactgggtgcggtctaagttacggttcacttacaatatggttacagaaactcc 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  50017480 caaatatcatttctctaatttaaactgcaaataggtcttatgtgtggtactggccgcggtctaagttacggttcacttacaatatggttacagaaactcc 50017579  T
Q  99 aaaatccttgataatacggggtcccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttttta 198  Q
    |||||||||||||||||||||| || || ||||||| ||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||     
T  50017580 aaaatccttgataatacggggttccgcttgtgtaacatagtggattttatgttatataacattgtccaataaggatatgccacgtggcacaccctttttt 50017679  T
Q  199 tnnnnnnn----tcaattaaagctgatggaaataaacacatgagag--tagaaactgagaaaaagcaacgcgctcctcttctccttctcttccacgacat 292  Q
    |           |||||||||||||||||||| |||||| ||||||  ||||||||||||||| ||||| |||| |||||||||||||| || |||||||    
T  50017680 taaaaaaaaaaatcaattaaagctgatggaaagaaacacgtgagagagtagaaactgagaaaacgcaacacgcttctcttctccttctcctctacgacat 50017779  T
Q  293 gaacaaaccacccaccttcaactatcctccgccaccgccgacacctccctccgccattgaccacctttccccttctttttctcccctgcgacaatctctt 392  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  50017780 gaactcaccacccaccttcaactatcctccgccaccgccgacacctccctcagccatcgaccacctttccccttctttttctcccatgcgacaatctctt 50017879  T
Q  393 ttttcagatttgatgaaatttgatttggaatggattttgagattcattgaggaaaatcaattaaagctggttcattgaggatttttattgttgagatcag 492  Q
    || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  50017880 tt-tcagatttgatgaaatttgatttggaatggattttgagattcattaaggaaaatcaattaaagctgattcattgagggtttttattgttgagatcag 50017978  T
Q  493 tagactaataagtaataacaacactttcaattgtctcttgagtgatggtttgatttaggatattttgaattgtgacaaaaatagtaaaaaagggttacaa 592  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  50017979 tagactaataagtaataacaacactttcagttgtctcttgagtgatgggttgatttaggatattttaaattgtgacaaaaatagtgaaaaagggttacaa 50018078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 142 - 540
Target Start/End: Complemental strand, 17431757 - 17431338
Alignment:
Q  142 attttatgttatataacattgtccaataaaggtgtgccacgtggcacaccctttttatnnnnnnn--tcaattaaagctgatggaaataaacacatgaga 239  Q
    ||||||||||||||||||||||||||| | ||||||||| |||||||||| ||||||          |||||||||||||||  ||  |||||| |||||    
T  17431757 attttatgttatataacattgtccaatcagggtgtgccatgtggcacaccttttttaaaaataaaattcaattaaagctgat--aagaaaacacgtgaga 17431660  T
Q  240 gtagaaactgagaaaa--agcaacgcgctcc-tcttctccttctcttccacgacat--gaacaaaccacccaccttcaactatcctccgccaccgccgac 334  Q
    ||||||||| ||||||  |  |||||  ||| |||||||||||||  | |||| ||  ||||  |||||||||| ||||||||||||||||||||||||     
T  17431659 gtagaaactcagaaaaccaaaaacgcattccctcttctccttctcccctacgatatcagaactcaccacccaccatcaactatcctccgccaccgccgat 17431560  T
Q  335 acctcc-----------------ctccgccattgaccacctttccccttctttttctcccctgcgacaatctcttttttcagatttgatgaaatttgatt 417  Q
    | ||||                 ||||||||| |||||||||||| ||||| |||||||| ||| |||||||||||||||| |||||||||| |||||||    
T  17431559 atctcctcctccgccgtcctcctctccgccatcgaccacctttcctcttctctttctcccatgcaacaatctcttttttcaaatttgatgaa-tttgatt 17431461  T
Q  418 tggaatggattttgagattcattgaggaaaatcaattaaagctggttcattgaggatttttattgttgagatcagtagactaataagtaataacaacact 517  Q
    ||||||||||||||||||||||||||||||||||| |||| ||  || ||||||| || |||||||||| |||| |||||||||||||||||||||||||    
T  17431460 tggaatggattttgagattcattgaggaaaatcaactaaaacttattaattgagggttgttattgttgatatcaatagactaataagtaataacaacact 17431361  T
Q  518 ttcaattgtctcttgagtgatgg 540  Q
    |||| |||||||||||| |||||    
T  17431360 ttcagttgtctcttgagagatgg 17431338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 11471317 - 11471391
Alignment:
Q  122 ccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacaccctttt 196  Q
    ||||| ||||||| |||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||    
T  11471317 ccacttgtgtaacatagtggattttaagttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 11471391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 463 - 582
Target Start/End: Complemental strand, 11476470 - 11476352
Alignment:
Q  463 ttcattgaggatttttattgttgagatcagtagactaataagtaataacaacactttcaattgtctcttgagtgatggtttgatttaggatattttgaat 562  Q
    |||||||||| || |||||||  ||||||||||||||||||  |  || | | ||||||||||||||||||| | ||| |||||||  ||| ||||||||    
T  11476470 ttcattgagggttgttattgtaaagatcagtagactaataacaacaaatatc-ctttcaattgtctcttgagaggtgggttgatttgtgattttttgaat 11476372  T
Q  563 tgtgacaaaaatagtaaaaa 582  Q
    ||||||||||||||| ||||    
T  11476371 tgtgacaaaaatagtgaaaa 11476352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 463 - 582
Target Start/End: Complemental strand, 11504511 - 11504393
Alignment:
Q  463 ttcattgaggatttttattgttgagatcagtagactaataagtaataacaacactttcaattgtctcttgagtgatggtttgatttaggatattttgaat 562  Q
    |||||||||| || |||||||  ||||||||||||||||||  |  || | | ||||||||||||||||||| | ||| |||||||  ||| ||||||||    
T  11504511 ttcattgagggttgttattgtaaagatcagtagactaataacaacaaatatc-ctttcaattgtctcttgagaggtgggttgatttgtgattttttgaat 11504413  T
Q  563 tgtgacaaaaatagtaaaaa 582  Q
    ||||||||||||||| ||||    
T  11504412 tgtgacaaaaatagtgaaaa 11504393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 463 - 593
Target Start/End: Original strand, 28244541 - 28244671
Alignment:
Q  463 ttcattgaggatttttattgttgagatcagtagactaataagtaataacaacactttcaattgtctcttgagtgatggtttgatttaggatattttgaat 562  Q
    |||||||||| || |||||||  ||||||||||||||||||  |  || | | |||||||||||||||| || | ||| |||||||  ||| ||||||||    
T  28244541 ttcattgagggttgttattgtaaagatcagtagactaataacaacaaatatc-ctttcaattgtctcttaagaggtgggttgatttgtgattttttgaat 28244639  T
Q  563 tgtgacaaaaatagt-aaaaaagggttacaat 593  Q
    ||||||||||||||| |||| |||||||||||    
T  28244640 tgtgacaaaaatagtgaaaagagggttacaat 28244671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 11318842 - 11318763
Alignment:
Q  117 gggtcccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacaccctttt 196  Q
    |||| ||||| ||||||| | | | |||||| |||||||||||||||||||| | |||||||||| ||||||||||||||    
T  11318842 gggttccacttgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacatggcacaccctttt 11318763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 11476863 - 11476784
Alignment:
Q  117 gggtcccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacaccctttt 196  Q
    |||| ||||| ||||||| | | | |||||| |||||||||||||||||||| | |||||||||| ||||||||||||||    
T  11476863 gggttccacttgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacatggcacaccctttt 11476784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 28244189 - 28244272
Alignment:
Q  117 gggtcccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacg--tggcacacccttttta 198  Q
    |||| ||||| ||||||| | | | |||||| |||||||||||||||||||| | |||||||||||  ||||||||||||||||    
T  28244189 gggttccacttgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacgtatggcacacccttttta 28244272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 17430785 - 17430839
Alignment:
Q  142 attttatgttatataacattgtccaataaaggtgtgccacgtggcacaccctttt 196  Q
    |||||||||||||||| |||||||||| | | |||||||||||||||||| ||||    
T  17430785 attttatgttatataatattgtccaatcaggatgtgccacgtggcacaccatttt 17430839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 50027592 - 50027519
Alignment:
Q  117 gggtcccactcgtgtaacgta-gtggattttatgttatataacattgtccaataaaggtgtgccacgtggcaca 189  Q
    |||| ||||| ||||||| || ||| |||||||||||| ||| |||| ||||| ||||||||||||||||||||    
T  50027592 gggttccacttgtgtaacataagtgaattttatgttatgtaatattgcccaatcaaggtgtgccacgtggcaca 50027519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 28244380 - 28244425
Alignment:
Q  300 ccacccaccttcaactatcctccgccaccgccgacacctccctccg 345  Q
    ||||||||| |||||| | |||||||||||||||||| ||||||||    
T  28244380 ccacccaccatcaacttttctccgccaccgccgacacttccctccg 28244425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 392 - 440
Target Start/End: Original strand, 28244487 - 28244534
Alignment:
Q  392 tttttcagatttgatgaaatttgatttggaatggattttgagattcatt 440  Q
    ||||||| |||||||||| |||||||||||||  |||||||||||||||    
T  28244487 tttttcaaatttgatgaa-tttgatttggaattaattttgagattcatt 28244534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 35534555 - 35534507
Alignment:
Q  147 atgttatataacattgtccaataaaggtgtgccacgtggcacacccttt 195  Q
    ||||||||||| |||| ||||| |||||||| || ||||||||||||||    
T  35534555 atgttatataatattggccaattaaggtgtgtcatgtggcacacccttt 35534507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 116 - 593
Target Start/End: Complemental strand, 25484344 - 25483881
Alignment:
Q  116 ggggtcccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacaccctttttatnnnnnnnt-caattaa 214  Q
    ||||| ||||| ||||||| |||||||||||  |||||||||||||||||||||| |||||||||||||||||| ||||||| |       | || ||||    
T  25484344 ggggttccacttgtgtaacatagtggatttt--gttatataacattgtccaataagggtgtgccacgtggcacatccttttttttaaaaatttcagttaa 25484247  T
Q  215 agctgatggaaataaacacatgagag--tagaaactgagaaaaagcaacgcgctcctcttctccttctcttccacgacatgaacaaaccacccaccttca 312  Q
    || ||||||||| |||||| ||||||  |||||| |||||||| |||||| |||||||||||| ||||| || |||||||||||  ||||||||||||||    
T  25484246 agttgatggaaagaaacacgtgagagagtagaaattgagaaaacgcaacgtgctcctcttctcgttctcctctacgacatgaactcaccacccaccttca 25484147  T
Q  313 actatcctccgccaccgccgacacctccctccgccattgaccacctttccccttctttttctcccctgcgacaatctcttttttcagatttgatgaaatt 412  Q
    ||| |||||||||||| |||||| |             ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  25484146 act-tcctccgccaccaccgacatc-------------gaccacctttccccttctttttctcccctacgacaatctcttttt-cagatttgatgaaatt 25484062  T
Q  413 tgatttggaatggattttgagattcattgaggaaaatcaattaaagctggttcattgaggatttttattgttgagatcagtagactaataagtaataaca 512  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  25484061 tgatttggaaaggattttgagattcattgaggaaaatcaattaaagctaattcattgagggtttttattgttgagatcactagactaataagtaataaca 25483962  T
Q  513 acactttcaattgtctcttgagtgatggtttgatttaggatattttgaattgtgacaaaaatagtaaaaaagggttacaat 593  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||  |||||||||    
T  25483961 acactttcagttgtctcttgagtgatgggttgatttaggatattttgaattgtgacaaaaatagtgaaaagcggttacaat 25483881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 25379443 - 25379519
Alignment:
Q  122 ccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttttta 198  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  25379443 ccacttgtgtaacatagtggattttatgttatataacattgtccaataagggtgtgccacatggcacacccttttta 25379519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 10293024 - 10292976
Alignment:
Q  147 atgttatataacattgtccaataaaggtgtgccacgtggcacacccttt 195  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  10293024 atgttatataacattggccaattaaggtgtgccacgtggcacacccttt 10292976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 25384145 - 25384065
Alignment:
Q  116 ggggtcccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacaccctttt 196  Q
    ||||| ||||| ||||||| | | | |||||| |||||||||||| ||||||| | |||||||||||||||||||||||||    
T  25384145 ggggttccacttgtgtaacattgggtattttaagttatataacatggtccaatcagggtgtgccacgtggcacaccctttt 25384065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 516 - 593
Target Start/End: Complemental strand, 25383763 - 25383685
Alignment:
Q  516 ctttcaattgtctcttgagtgatggtttgatttaggatattttgaattgtgacaaaaatagt-aaaaaagggttacaat 593  Q
    |||||| |||||||||||| | ||| |||||||  ||| ||||||||||||||||||||||| |||| |||||||||||    
T  25383763 ctttcagttgtctcttgagaggtgggttgatttgtgattttttgaattgtgacaaaaatagtgaaaagagggttacaat 25383685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 440
Target Start/End: Complemental strand, 25383957 - 25383821
Alignment:
Q  299 accacccaccttcaactatcctccgccaccgccgacacctccctccgccattgaccacctttccccttctttttctcccctgcgacaatctcttttttca 398  Q
    |||||||||| | |||| | |||||||||||||| | | || ||||||||  ||||||| || | ||||  |||||| | ||||||| |||   ||||||    
T  25383957 accacccaccattaacttttctccgccaccgccgccgc-tctctccgccaacgaccaccgtttctcttcactttctctcgtgcgacactct---ttttca 25383862  T
Q  399 gatttgatgaaatttgatttggaatggattttgagattcatt 440  Q
     |||||||||| |||||||||||||  |||||||||||||||    
T  25383861 aatttgatgaa-tttgatttggaattaattttgagattcatt 25383821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 25482733 - 25482788
Alignment:
Q  142 attttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttttt 197  Q
    |||||| |||||||||||||| ||||| | | |||||||| |||||||||||||||    
T  25482733 attttaagttatataacattgcccaattaggatgtgccacatggcacacccttttt 25482788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 38010630 - 38010680
Alignment:
Q  145 ttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttt 195  Q
    |||||||||||||||||  ||||| ||||||||||| ||||||||| ||||    
T  38010630 ttatgttatataacattagccaattaaggtgtgccatgtggcacacacttt 38010680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 23231649 - 23231600
Alignment:
Q  142 attttatgttatataacattgtccaataaaggtgtgccacg-tggcacac 190  Q
    ||||||||||| ||||||||||||||| ||||||| ||||| ||||||||    
T  23231649 attttatgttacataacattgtccaatcaaggtgtaccacgatggcacac 23231600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 10126630 - 10126551
Alignment:
Q  117 gggtcccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacaccctttt 196  Q
    |||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10126630 gggttccacttgtgtaacatagtggattttatgttatataacattgtccaataagggtgtgccacgtggcacaccctttt 10126551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 463 - 593
Target Start/End: Original strand, 19306185 - 19306315
Alignment:
Q  463 ttcattgaggatttttattgttgagatcagtagactaataagtaataacaacactttcaattgtctcttgagtgatggtttgatttaggatattttgaat 562  Q
    |||||||||| || |||||||  ||||||||||||||||||  || || | | ||||||||||||||||||| | ||| |||||||  ||| ||||||||    
T  19306185 ttcattgagggttgttattgtaaagatcagtagactaataacaaaaaatatc-ctttcaattgtctcttgagaggtgggttgatttgtgattttttgaat 19306283  T
Q  563 tgtgacaaaaatagt-aaaaaagggttacaat 593  Q
    ||||||||||||||| |||| |||||||||||    
T  19306284 tgtgacaaaaatagtgaaaagagggttacaat 19306315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 19310410 - 19310336
Alignment:
Q  123 cactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttttt 197  Q
    |||| ||||||| |||| |||||||||||||||||||||||||||||| | |||||||||||||||||| |||||    
T  19310410 cacttgtgtaacatagtcgattttatgttatataacattgtccaataaggatgtgccacgtggcacacctttttt 19310336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 10122322 - 10122403
Alignment:
Q  117 gggtcccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttttta 198  Q
    |||| ||||| ||||||| | | | ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  10122322 gggttccacttgtgtaacattgggtattttatgttatataacattgtccaatcagggtgtgccacgtggcacacccttttta 10122403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 463 - 582
Target Start/End: Original strand, 10122673 - 10122791
Alignment:
Q  463 ttcattgaggatttttattgttgagatcagtagactaataagtaataacaacactttcaattgtctcttgagtgatggtttgatttaggatattttgaat 562  Q
    |||||||||| || |||||||  ||||||||||||||||||  |||||  |  ||||||||||||||||||| | ||| |||||||  ||| ||||||||    
T  10122673 ttcattgagggttgttattgtaaagatcagtagactaataac-aataaatatcctttcaattgtctcttgagaggtgggttgatttgtgattttttgaat 10122771  T
Q  563 tgtgacaaaaatagtaaaaa 582  Q
    ||||||||||||||| ||||    
T  10122772 tgtgacaaaaatagtgaaaa 10122791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 19305841 - 19305921
Alignment:
Q  117 gggtcccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttttt 197  Q
    |||| ||||| ||||||| | | | |||||| |||||||||||||||||||| | ||||||||||||||||||||||||||    
T  19305841 gggttccacttgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacgtggcacacccttttt 19305921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 341 - 440
Target Start/End: Original strand, 19306083 - 19306178
Alignment:
Q  341 ctccgccattgaccacctttccccttctttttctcccctgcgacaatctcttttttcagatttgatgaaatttgatttggaatggattttgagattcatt 440  Q
    ||||||||  ||||||| |||| ||||  |||||| ||||||||| |||   |||||| |||||||||| |||||||||||||  |||||||||||||||    
T  19306083 ctccgccaacgaccaccgttcctcttcactttctctcctgcgacactct---ttttcaaatttgatgaa-tttgatttggaattaattttgagattcatt 19306178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 19306023 - 19306071
Alignment:
Q  299 accacccaccttcaactatcctccgccaccgccgacacctccctccgcc 347  Q
    |||||||||| |||||| | |||||||||||||||||| ||||||||||    
T  19306023 accacccaccatcaacttttctccgccaccgccgacacttccctccgcc 19306071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 392 - 440
Target Start/End: Original strand, 10122619 - 10122666
Alignment:
Q  392 tttttcagatttgatgaaatttgatttggaatggattttgagattcatt 440  Q
    ||||||| |||||||||| |||||||||||||  |||||||||||||||    
T  10122619 tttttcaaatttgatgaa-tttgatttggaattaattttgagattcatt 10122666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 34245592 - 34245628
Alignment:
Q  147 atgttatataacattgtccaataaaggtgtgccacgt 183  Q
    |||||||||||||||| |||||||| |||||||||||    
T  34245592 atgttatataacattgaccaataaaagtgtgccacgt 34245628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 35006191 - 35006231
Alignment:
Q  143 ttttatgttatataacattgtccaataaaggtgtgccacgt 183  Q
    ||||||||||||||||||||| |||| |||| |||||||||    
T  35006191 ttttatgttatataacattgttcaatcaaggcgtgccacgt 35006231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 38255548 - 38255469
Alignment:
Q  117 gggtcccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacaccctttt 196  Q
    |||| ||||| ||||||| |||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||    
T  38255548 gggttccacttgtgtaacatagtggattttaagttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 38255469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 43154097 - 43154170
Alignment:
Q  122 ccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttt 195  Q
    ||||| ||||||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||    
T  43154097 ccacttgtgtaacatagtggattttaagttatataacattgtccaatcagggtgtgccacgtggcacacccttt 43154170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 463 - 582
Target Start/End: Original strand, 38250494 - 38250612
Alignment:
Q  463 ttcattgaggatttttattgttgagatcagtagactaataagtaataacaacactttcaattgtctcttgagtgatggtttgatttaggatattttgaat 562  Q
    |||||||||| || |||||||  ||||||||||||||||||  |  || | | ||||||||||||||||||| | ||| |||||||  ||| ||||||||    
T  38250494 ttcattgagggttgttattgtaaagatcagtagactaataacaacaaatatc-ctttcaattgtctcttgagaggtgggttgatttgtgattttttgaat 38250592  T
Q  563 tgtgacaaaaatagtaaaaa 582  Q
    ||||||||||||||| ||||    
T  38250593 tgtgacaaaaatagtgaaaa 38250612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 463 - 582
Target Start/End: Complemental strand, 43159031 - 43158913
Alignment:
Q  463 ttcattgaggatttttattgttgagatcagtagactaataagtaataacaacactttcaattgtctcttgagtgatggtttgatttaggatattttgaat 562  Q
    |||||||||| || |||||||  ||||||||||||||||||  |  || | | ||||||||||||||||||| | ||| |||||||  ||| ||||||||    
T  43159031 ttcattgagggttgttattgtaaagatcagtagactaataacaacaaatatc-ctttcaattgtctcttgagaggtgggttgatttgtgattttttgaat 43158933  T
Q  563 tgtgacaaaaatagtaaaaa 582  Q
    ||||||||||||||| ||||    
T  43158932 tgtgacaaaaatagtgaaaa 43158913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 195
Target Start/End: Complemental strand, 43159429 - 43159350
Alignment:
Q  116 ggggtcccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttt 195  Q
    ||||| ||||| ||||||| | | | |||||| |||||||||||||||||||| | ||||||||||||||||||||||||    
T  43159429 ggggttccacttgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacgtggcacacccttt 43159350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 38250094 - 38250174
Alignment:
Q  116 ggggtcccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacaccctttt 196  Q
    ||||| ||||| ||||||| | | | |||||| |||||||||||||||||||| | |||||||||| ||||||||||||||    
T  38250094 ggggttccacttgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacatggcacaccctttt 38250174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 22492462 - 22492406
Alignment:
Q  142 attttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttttta 198  Q
    |||||| |||||||||||||| ||||| | | |||||||||||||||||||||||||    
T  22492462 attttaagttatataacattgcccaatcaggatgtgccacgtggcacacccttttta 22492406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 48944307 - 48944362
Alignment:
Q  142 attttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttttt 197  Q
    |||||||||||||||||||||| || | | |||||||||||||||||||| |||||    
T  48944307 attttatgttatataacattgttcagtcagggtgtgccacgtggcacacctttttt 48944362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 593
Target Start/End: Original strand, 22489492 - 22489724
Alignment:
Q  341 ctccgccattgaccacctttccccttctttttctcccctgcgacaatctcttttttcagatttgatgaaatttgatttggaatggattttgagattcatt 440  Q
    |||| |||| ||||||| |||| ||||  |||||| ||||||||| |||   |||||| |||||||||| |||||||||||||  |||||||||||||||    
T  22489492 ctccaccatcgaccaccgttcctcttcactttctctcctgcgacactct---ttttcaaatttgatgaa-tttgatttggaattaattttgagattcatt 22489587  T
Q  441 gaggaaaatcaattaaagctggttcattgaggatttttattgttgagatcagtagactaataagtaataacaacactttcaattgtctcttgagtgatgg 540  Q
     |||                | |||||||||| || ||||||| |||||||||||||||||||  || ||  |  |||||| |||||||||||| | |||    
T  22489588 aagg----------------gattcattgagggttgttattgtagagatcagtagactaataa-caacaaatatcctttcagttgtctcttgagaggtgg 22489670  T
Q  541 tttgatttaggatattttgaattgtgacaaaaatagt-aaaaaagggttacaat 593  Q
     |||||||  |||  |||||||| ||||||||||||| |||| |||||||||||    
T  22489671 gttgatttgtgattatttgaattttgacaaaaatagtgaaaagagggttacaat 22489724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 22489242 - 22489322
Alignment:
Q  117 gggtcccactcgtgtaacgtagtggattttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttttt 197  Q
    |||| ||||| ||||||| | | | |||||| ||||||||||||||| |||| | ||||||||| | ||||||||||||||    
T  22489242 gggttccacttgtgtaacattgggtattttaagttatataacattgttcaatcagggtgtgccatgcggcacacccttttt 22489322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 54362247 - 54362301
Alignment:
Q  143 ttttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttttt 197  Q
    |||||||||||||||||||| | ||| | |||||||||| |||||||||||||||    
T  54362247 ttttatgttatataacattgcctaatcagggtgtgccacatggcacacccttttt 54362301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 28166932 - 28166982
Alignment:
Q  147 atgttatataacattgtccaataaaggtgtgccacgtggcacacccttttt 197  Q
    |||||||||||||||| | ||| | |||||||||||||||||||| |||||    
T  28166932 atgttatataacattggcgaatcagggtgtgccacgtggcacacctttttt 28166982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 28167641 - 28167591
Alignment:
Q  147 atgttatataacattgtccaataaaggtgtgccacgtggcacacccttttt 197  Q
    |||||||||||||||| | ||| | |||||||||||| |||||||||||||    
T  28167641 atgttatataacattggcgaatcagggtgtgccacgtcgcacacccttttt 28167591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 48792834 - 48792880
Alignment:
Q  142 attttatgttatataacattgtccaataaaggtgtgccacgtggcac 188  Q
    |||||||| |||||||||||| ||||| | |||||||||||||||||    
T  48792834 attttatggtatataacattgcccaatcagggtgtgccacgtggcac 48792880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 48796095 - 48796046
Alignment:
Q  142 attttatgttatataacattgtccaataaaggtgtgccacgtggcacacc 191  Q
    |||| ||| |||||||||||| ||||| | ||||||||||||||||||||    
T  48796095 atttcatggtatataacattgcccaatcagggtgtgccacgtggcacacc 48796046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 341 - 385
Target Start/End: Complemental strand, 54362601 - 54362557
Alignment:
Q  341 ctccgccattgaccacctttccccttctttttctcccctgcgaca 385  Q
    ||||||||| |||||||||||| ||||| ||| ||||||||||||    
T  54362601 ctccgccatcgaccacctttcctcttctctttatcccctgcgaca 54362557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 181
Target Start/End: Original strand, 6449 - 6483
Alignment:
Q  147 atgttatataacattgtccaataaaggtgtgccac 181  Q
    |||||||||||||||| ||||||||||||||||||    
T  6449 atgttatataacattggccaataaaggtgtgccac 6483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 33862375 - 33862429
Alignment:
Q  143 ttttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttttt 197  Q
    ||||||||||||||||| || ||| | | |||||||||| |||||||||||||||    
T  33862375 ttttatgttatataacactgcccattcagggtgtgccacatggcacacccttttt 33862429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 47186330 - 47186280
Alignment:
Q  145 ttatgttatataacattgtccaataaaggtgtgccacgtggcacacccttt 195  Q
    |||||||||||||||||  ||||| ||||||||||| ||||||||| ||||    
T  47186330 ttatgttatataacattagccaattaaggtgtgccatgtggcacacacttt 47186280  T

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