View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11341_low_6 (Length: 263)
Name: NF11341_low_6
Description: NF11341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11341_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 28264466 - 28264215
Alignment:
| Q |
1 |
tacaggtaaggctagcaaagagtcagatgtgtatagttttggggttgttgccttggaaatcgcaactggaaagaaagctgttcaagttatgaaggaacaa |
100 |
Q |
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| T |
28264466 |
tacaggtaagactagcaaagagtcagatgtgtatagttttggggttgttgccttggaaatcgcaactggaaagaaagctgttcaagttatgaaggaacaa |
28264367 |
T |
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| Q |
101 |
ggtgaagataagggattaattgactgggtttgggatcattatggaagaggagaactacttgtgactatggatgagaatttgcaaaaggattttgatgaga |
200 |
Q |
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| T |
28264366 |
ggtgaagataagggattaattgactgggtttgggatcattatggaagaggagaactacttgtgactatggatgagaatttgcaaaaggattttgatgaga |
28264267 |
T |
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| Q |
201 |
aacaagtagagtttttgttgattgttggattatggtgtgctcatcctgatgt |
252 |
Q |
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| T |
28264266 |
aacaagtagagtttttgttgattgttggattatggtgtgctcatccggatgt |
28264215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 28289270 - 28289521
Alignment:
| Q |
1 |
tacaggtaaggctagcaaagagtcagatgtgtatagttttggggttgttgccttggaaatcgcaactggaaagaaagctgttcaagttatgaaggaacaa |
100 |
Q |
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| T |
28289270 |
tacaggtaaggctagcaaagagtcagatgtgtatagttttggggttgttgccttggagatcacaactggacggaaagctgttgaagttatgagggataaa |
28289369 |
T |
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| Q |
101 |
ggtgaagataagggattaattgactgggtttgggatcattatggaagaggagaactacttgtgactatggatgagaatttgcaaaaggattttgatgaga |
200 |
Q |
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| T |
28289370 |
gatggagataagggattgattgagtgggtttgggatcatcatggaagaggagagctacttgtgaccatggatgagaatttgcgaaaggatttcgatgaga |
28289469 |
T |
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| Q |
201 |
aacaagtagagtttttgttgattgttggattatggtgtgctcatcctgatgt |
252 |
Q |
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| T |
28289470 |
aacaagtagagtgtttgttgattgttggattatggtgtgctcatcctgatgt |
28289521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 28279405 - 28279656
Alignment:
| Q |
1 |
tacaggtaaggctagcaaagagtcagatgtgtatagttttggggttgttgccttggaaatcgcaactggaaagaaagctgttcaagttatgaaggaacaa |
100 |
Q |
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||||||||||||||||||||| || ||||| ||||| ||||||||||| | |||||| ||| ||||||||| |||||| ||| |||||||| |||| || |
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| T |
28279405 |
tacaggtaaggctagcaaagaatctgatgtctatagctttggggttgtcgtcttggagatcacaactggaaggaaagccgttgaagttatggaggacaaa |
28279504 |
T |
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| Q |
101 |
ggtgaagataagggattaattgactgggtttgggatcattatggaagaggagaactacttgtgactatggatgagaatttgcaaaaggattttgatgaga |
200 |
Q |
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| T |
28279505 |
gatggagataagggattgattgagtgggtttgggatcattatggaagagaagaaatactcgtgaccatggatgagaatttgcgaaaggatttcgatgaga |
28279604 |
T |
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| Q |
201 |
aacaagtagagtttttgttgattgttggattatggtgtgctcatcctgatgt |
252 |
Q |
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| T |
28279605 |
aacaagtagagtgtttgttgattgttggattatggtgtgttcatcctgatgt |
28279656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 28304467 - 28304232
Alignment:
| Q |
17 |
aaagagtcagatgtgtatagttttggggttgttgccttggaaatcgcaactggaaagaaagctgttcaagttatgaaggaacaaggtgaagataagggat |
116 |
Q |
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|||||||||||||| |||||||||||| | |||| ||| || || | | ||||| |||||| | ||||||||||||| ||| |||||| |||||| |
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| T |
28304467 |
aaagagtcagatgtttatagttttgggatagttgtcttagagataacctccggaaaaaaagctactgaagttatgaaggagaaagatgaagagaagggaa |
28304368 |
T |
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| Q |
117 |
taattgactgggtttgggatcattatggaagaggagaactacttgtgactatggatgagaatttgcaaaaggattttgatgagaaacaagtagagttttt |
216 |
Q |
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| T |
28304367 |
tgattgagtgggtttgggatcattatggaaaaggagagctacttgtggcaatggatgagaatttgaggaaagattttgatgagaaacaagtagagtgctt |
28304268 |
T |
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| Q |
217 |
gttgattgttggattatggtgtgctcatcctgatgt |
252 |
Q |
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| T |
28304267 |
gatgattgttggattatggtgtgctcatcctgatgt |
28304232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 252
Target Start/End: Complemental strand, 28294280 - 28294030
Alignment:
| Q |
2 |
acaggtaaggctagcaaagagtcagatgtgtatagttttggggttgttgccttggaaatcgcaactggaaagaaagctgttcaagttatgaaggaacaag |
101 |
Q |
| |
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||||||| ||| || ||||||||||||||||||||||||||| | ||||| ||||| || | ||||| ||||||||| | |||| |||||| || || |
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| T |
28294280 |
acaggtagggcaagtaaagagtcagatgtgtatagttttgggatagttgctttggagataactactggtaagaaagctactaaagtgatgaagcaaaaaa |
28294181 |
T |
|
| Q |
102 |
gtgaagataagggattaattgactgggtttgggatcattatggaagaggagaactacttgtgactatggatgagaatttgcaaaaggattttgatgagaa |
201 |
Q |
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|||||| ||||| | ||||| ||| ||||||||||||||||||| ||||| |||||||| | |||||||| ||||||||||| |||||||||||||| |
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| T |
28294180 |
atgaagagcagggaatgattgaatggatttgggatcattatggaagtggagagctacttgtcgccatggatgaaaatttgcaaaatgattttgatgagaa |
28294081 |
T |
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| Q |
202 |
acaagtagagtttttgttgattgttggattatggtgtgctcatcctgatgt |
252 |
Q |
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| ||||||||| ||| ||||||||||||| |||||||||||||||||||| |
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| T |
28294080 |
agaagtagagtgcttgatgattgttggattgtggtgtgctcatcctgatgt |
28294030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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