View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11342_high_1 (Length: 817)
Name: NF11342_high_1
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11342_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 684; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 22 - 808
Target Start/End: Original strand, 43395950 - 43396738
Alignment:
| Q |
22 |
ttgattacttaggcgttgagattctgagacgcagaagtgatttgacagactaaaactttcgtatttactaatgcaagttttttacgtcttccaattctgt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43395950 |
ttgattacttaggcgttgagattctgagacgcagaagtgatttgacagactaaaactttcgtatttactaatgcaagttttttacgtcttccaattctgt |
43396049 |
T |
|
| Q |
122 |
ctgttttatgtaataacataactcttctctccctgagcacaccatctttaattcctctttatctcttatcagtttgcttataaatttaaagaaaaagtta |
221 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43396050 |
ctgttttatgtaataacattactcttccctccctgagcacaccatctttatttcctctttatctcttatcagtttgcttataaatttaaagaaaaagtta |
43396149 |
T |
|
| Q |
222 |
ggcatactatataaactataagcagataatttggacaccacagaacnnnnnnncacagtgagatactgttatttttgaactgccaaa-----gagtaaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43396150 |
ggcatactatataaactataagcagataatttggacaccacagaacaaaaaaactcagtgagatactgttatttttgaactgccaaattaaagagtaaaa |
43396249 |
T |
|
| Q |
317 |
tatcttggtatagctgagattataattgaaggagaggggagagatttatatttcaatgctttgtttttggttgagaggaggtgaggggagataatagtga |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
43396250 |
tatcttggtatagctgagattataattgaaggagaggggagagatttat--ttcaatgctttgtttttggttgagagtaggctaggggagataatagtga |
43396347 |
T |
|
| Q |
417 |
attaaaattaggggtgtggttacgttgcgatctttgatattgcagacaaatgcagttgatgcagatgcaatgtagctgcggagaccactaaagtcattat |
516 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43396348 |
attaaaattaggggtgtggttgcgttgcgatctttgatattgcagacaaatgcagttgatgcagatgcaatgtagctgcggagaccactaaagtcattat |
43396447 |
T |
|
| Q |
517 |
gttgtggtcgtgcatataattgttgacatcacacgggaaggagcaagatcttccaattccatctcaccaataaaattattaaaaagatacatctccaata |
616 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43396448 |
gttgtggtcgtgcatatagttgttgacatcacacgggaaggagcgagatcttccaattccatctcaccaataaaattattaaaaagatacatctccaata |
43396547 |
T |
|
| Q |
617 |
attgaccacttgaagtttcttcattaattccccttctttcatctctccggcacaccacattaaaatctccaagaatacaccactccccttcacctctatt |
716 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43396548 |
attgaccacttgaagtttcttcattaattccccttctttcatctctccggcacaccacattaaaatctccaagaatacaccacgccccttcacctctatt |
43396647 |
T |
|
| Q |
717 |
agcacgctcctccactaacgcctcccacatcctcctcttagccaccaaatcacatttagaataaacattaaccacaatacatctctgcttct |
808 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43396648 |
agcacgctcctccactaacgcctcccacatcct-ctcttagccaccaaatcacatttagaataaacattaaccacaatacatctcttcttct |
43396738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 43400091 - 43400190
Alignment:
| Q |
22 |
ttgattacttaggcgttgagattctgagacgcagaagtgatttgacagactaaaactttcgtatttactaatgcaagttttttacgtcttccaattctgt |
121 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||| ||||||| ||||||| |||||| || |||| |||||||| || ||||| |||||| |
|
|
| T |
43400091 |
ttgattacttgggcgttgagattctgagacgcagaagcgatttggcagactagaactttcatatttagtactgcaggttttttatgtattccagttctgt |
43400190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 37410438 - 37410369
Alignment:
| Q |
22 |
ttgattacttaggcgttgagattctgagacgcagaagtgatttgacagactaaaactttcgtatttacta |
91 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||| | || ||||||| ||||||||| |
|
|
| T |
37410438 |
ttgattacttaggtgttgagattctgagacgcagaagcgatttgacaaagtagaactttcatatttacta |
37410369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 738 - 800
Target Start/End: Original strand, 8507639 - 8507701
Alignment:
| Q |
738 |
ctcccacatcctcctcttagccaccaaatcacatttagaataaacattaaccacaatacatct |
800 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||| |||||||| ||||| | |||||||||||| |
|
|
| T |
8507639 |
ctcccacaacctccttttagccaccaaatcacacttagaatacacattgatcacaatacatct |
8507701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University