View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11342_high_10 (Length: 444)

Name: NF11342_high_10
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11342_high_10
NF11342_high_10
[»] chr2 (10 HSPs)
chr2 (9-444)||(44791447-44791894)
chr2 (9-444)||(35165723-35166167)
chr2 (78-131)||(42651273-42651326)
chr2 (88-131)||(12001103-12001146)
chr2 (76-123)||(19405359-19405406)
chr2 (83-123)||(3382426-3382466)
chr2 (168-200)||(39604028-39604060)
chr2 (71-123)||(41564837-41564889)
chr2 (71-111)||(41566370-41566410)
chr2 (76-132)||(42650594-42650650)
[»] chr3 (2 HSPs)
chr3 (76-123)||(46889508-46889555)
chr3 (74-120)||(52696049-52696095)
[»] chr7 (2 HSPs)
chr7 (70-131)||(38099205-38099266)
chr7 (76-123)||(25758641-25758690)
[»] chr4 (1 HSPs)
chr4 (83-132)||(36488132-36488181)
[»] chr6 (1 HSPs)
chr6 (84-131)||(10092428-10092475)
[»] chr5 (1 HSPs)
chr5 (76-118)||(32716223-32716265)


Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 9 - 444
Target Start/End: Original strand, 44791447 - 44791894
Alignment:
Q  9 agaagaaccaagagaagtcacataccttagttaggaatttttctaattttacagatggaatattgtaaaccattggattaattagatttaatggttgaga 108  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||   ||||||||||||||||||||||||||||||||||    
T  44791447 agaagaactaagagaagtcacataccttagttaggaattttactaattttacagttggaatat---aaaccattggattaattagatttaatggttgaga 44791543  T
Q  109 ttttgtgtaagtcttctgacttatgtgtcaacaaatcgtaagtcatacatctgcatatatttctatagtcaccttgatttactgatgtttcttttaagta 208  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||  |||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  44791544 ttttgtgtaagtcttctgacttatgtgtcaatagatcgtaagtcata--tctgcatatatttctatagtcaccttgatttattaatgtttcttttaagta 44791641  T
Q  209 tgggagctta----------ttatac-------tcttacataggtaatcaatcaagtccctctaatgagaaaaatgatgaacttgagtcggttgacaata 291  Q
    ||||||||||          ||||||       ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  44791642 tgggagcttagtgtagttaattatacagttgcatcttacataggtaatcaatcaagtccctctggtgagaaaaatgatgaacttgagtcggttgacaata 44791741  T
Q  292 atattggtaatcttcaagagaacaccaccttacacgtctttgtcactaaaaaatcccttagaattaattaggagtttccaaaatcatttaaaaatgaagg 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44791742 atattggtaatcttcaagagaacaccaccttacacgtctttgtcactaaaaaatcccttagaattaattaggagtttccaaaatcatttaaaaatgaagg 44791841  T
Q  392 ttttcaaggnnnnnnnttgagaggaggaccaaagaagcacaagcatgaagata 444  Q
    |||||||||       |||||||||||||||||||||||||||||||||||||    
T  44791842 ttttcaaggaaaaaaattgagaggaggaccaaagaagcacaagcatgaagata 44791894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 9 - 444
Target Start/End: Complemental strand, 35166167 - 35165723
Alignment:
Q  9 agaagaaccaagagaagtcacataccttagttaggaatttttctaattttacagatggaatattgtaaaccattggattaattagatttaatggttgaga 108  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35166167 agaagaactaagagaagtcacataccttagttagtaatttttctaattttacagatggaatattgtaaaccattggattaattaaatttaatggttgaga 35166068  T
Q  109 ttttgtgtaagtcttctgacttatgtgtcaacaaatcgtaagtcatacatctgcatatatttctatagtcaccttgatttactgatgtttcttttaagta 208  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  35166067 ttttgtgtaagtcttctgacttatgtgtcaacagatcgtaagtcatacatctgcatatatttctatagtcaccttgatttactaatgtttc-tttaagta 35165969  T
Q  209 tgggagctt----------attatac-------tcttacataggtaatcaatcaagtccctctaatgagaaaaatgatgaacttgagtcggttgacaata 291  Q
    |||||||||          |||||||       ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35165968 tgggagcttagtctagttaattatacagttacatcttacataggtaatcaatcaagtccctctagtgagaaaaatgatgaacttgagtcggttgacaata 35165869  T
Q  292 atattggtaatcttcaagagaacaccaccttacacgtctttgtcactaaaaaatcccttagaattaattaggagtttccaaaatcatttaaaaatgaagg 391  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  35165868 atattggtaatcttcaagagaacaccaccttacacgtctctgtcactaaaaaatcccttagaattaattaggagtttccaaaatcatttaaaaatgaa-- 35165771  T
Q  392 ttttcaaggnnnnnnnttgagaggaggaccaaagaagcacaagcatgaagata 444  Q
         ||||       |||||||||||||||||||||||||||||||||||||    
T  35165770 -----aaggaaaaaaattgagaggaggaccaaagaagcacaagcatgaagata 35165723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 42651273 - 42651326
Alignment:
Q  78 ccattggattaattagatttaatggttgagattttgtgtaagtcttctgactta 131  Q
    |||||| ||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  42651273 ccattgaattaatttgatttaatggttgagatttggtgtaagtcttttgactta 42651326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 12001146 - 12001103
Alignment:
Q  88 aattagatttaatggttgagattttgtgtaagtcttctgactta 131  Q
    |||| ||||||||||||||||||| ||||||||||| |||||||    
T  12001146 aatttgatttaatggttgagatttggtgtaagtcttttgactta 12001103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 19405406 - 19405359
Alignment:
Q  76 aaccattggattaattagatttaatggttgagattttgtgtaagtctt 123  Q
    |||||||||||||||| |||||||||||| | |||| |||||||||||    
T  19405406 aaccattggattaatttgatttaatggttaaaatttggtgtaagtctt 19405359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 3382466 - 3382426
Alignment:
Q  83 ggattaattagatttaatggttgagattttgtgtaagtctt 123  Q
    |||||||||||||||||||||||| |||| |||||| ||||    
T  3382466 ggattaattagatttaatggttgaaatttggtgtaaatctt 3382426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 200
Target Start/End: Original strand, 39604028 - 39604060
Alignment:
Q  168 tttctatagtcaccttgatttactgatgtttct 200  Q
    |||||||||||||||||||||||| ||||||||    
T  39604028 tttctatagtcaccttgatttactcatgtttct 39604060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 41564889 - 41564837
Alignment:
Q  71 ttgtaaaccattggattaattagatttaatggttgagattttgtgtaagtctt 123  Q
    |||| |||||||| ||| ||| |||||||||||| |||||| |||||||||||    
T  41564889 ttgtgaaccattgaattgatttgatttaatggttaagatttggtgtaagtctt 41564837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 41566370 - 41566410
Alignment:
Q  71 ttgtaaaccattggattaattagatttaatggttgagattt 111  Q
    |||| |||||||||||||||| |||||||| ||||||||||    
T  41566370 ttgtgaaccattggattaatttgatttaatagttgagattt 41566410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 42650650 - 42650594
Alignment:
Q  76 aaccattggattaattagatttaatggttgagattttgtgtaagtcttctgacttat 132  Q
    ||||||| |||||||| |||||||||||| ||||||  | |||||||| ||||||||    
T  42650650 aaccatttgattaatttgatttaatggttaagatttgatataagtcttttgacttat 42650594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 46889555 - 46889508
Alignment:
Q  76 aaccattggattaattagatttaatggttgagattttgtgtaagtctt 123  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||    
T  46889555 aaccattagattaattagatctaatggttgagattttgtgtaagtctt 46889508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 52696049 - 52696095
Alignment:
Q  74 taaaccattggattaattagatttaatggttgagattttgtgtaagt 120  Q
    ||||||||||||||||||  |||||||||||||||||| ||||||||    
T  52696049 taaaccattggattaattgaatttaatggttgagatttggtgtaagt 52696095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 38099205 - 38099266
Alignment:
Q  70 attgtaaaccattggattaattagatttaatggttgagattttgtgtaagtcttctgactta 131  Q
    ||||| ||||||| |||||||||||| ||||||||||||||| ||| ||||||| |||||||    
T  38099205 attgtgaaccattagattaattagatataatggttgagatttggtgcaagtcttttgactta 38099266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 25758690 - 25758641
Alignment:
Q  76 aaccattggattaattagatttaatggttgagattt--tgtgtaagtctt 123  Q
    |||||||||||||||| |||||||||||||||||||  ||||||||||||    
T  25758690 aaccattggattaatttgatttaatggttgagatttggtgtgtaagtctt 25758641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 36488132 - 36488181
Alignment:
Q  83 ggattaattagatttaatggttgagattttgtgtaagtcttctgacttat 132  Q
    ||||||||||||||||||||||||||||| |||||||||||  |||||||    
T  36488132 ggattaattagatttaatggttgagatttggtgtaagtcttaagacttat 36488181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 131
Target Start/End: Original strand, 10092428 - 10092475
Alignment:
Q  84 gattaattagatttaatggttgagattttgtgtaagtcttctgactta 131  Q
    |||||| || |||||||||||||||||| ||||||||||| |||||||    
T  10092428 gattaactaaatttaatggttgagatttagtgtaagtcttatgactta 10092475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 32716265 - 32716223
Alignment:
Q  76 aaccattggattaattagatttaatggttgagattttgtgtaa 118  Q
    |||||||||||| ||||||||||||| ||||||||| ||||||    
T  32716265 aaccattggattgattagatttaatgtttgagatttggtgtaa 32716223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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