View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11342_high_11 (Length: 442)

Name: NF11342_high_11
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11342_high_11
NF11342_high_11
[»] chr1 (1 HSPs)
chr1 (1-292)||(11621814-11622105)


Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 11622105 - 11621814
Alignment:
Q  1 acaaatgcattttcccccaatgcagtcaactatgtggatcaaacagcaatgccataacatattatagcaaatctaagaaatgaaaaatacaatatgaccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11622105 acaaatgcattttcccccaatgcagtcaactatgtggatcaaacagcaatgccataacatattatagcaaatctaagaaatgaaaaatacaatatgaccc 11622006  T
Q  101 tagagattcttcaatgtgggacaaatgtctctgaaaattatcctaaaaatgactgatttgacctacgtttctaattctttaggatcgaattaatattttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11622005 tagagattcttcaatgtgggacaaatgtctctgaaaattatcctaaaaatgactaatttgacctacgtttctaattctttaggatcgaattaatattttt 11621906  T
Q  201 catttcttaggaactaaataggtctctatgtattttgtcatgactaatttggatatttactctaaatctaaatttttataagcaacttgacc 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11621905 catttcttaggaactaaataggtctctatgtattttgtcatgactaatttggatatttactctaaatctaaatttttataagcaacttgacc 11621814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University