View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11342_high_12 (Length: 409)
Name: NF11342_high_12
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11342_high_12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Original strand, 6008156 - 6008545
Alignment:
| Q |
19 |
caatatcagttatcccagctcagtatcacatcactctcatagatcacataacttaggagcctaagtaatgtctcatccgggacattcactttctcctacc |
118 |
Q |
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| T |
6008156 |
caatatcagttatcccagcttagtatcacatcactctcatagatcacataacttaggagcctaagtaatgtctcatccgggacattcactttctcctacc |
6008255 |
T |
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| Q |
119 |
actgaaaacgaaataaacaaacttaattaccaacctnnnnnnnnncaatcttaattaacacaaacccaccacacaaacgaaatcatagaataccctccaa |
218 |
Q |
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| T |
6008256 |
actgaaaacgaaataaacaaacttaattaccaacctaaaaaaaa-caatcttaattaacacaaatccaccacacaaacgaaatcatagaataccctccaa |
6008354 |
T |
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| Q |
219 |
tggatttcttccacgtgtccatttttaacactaagcaaaagcaacatggcttgtgattgccatgcgtgacttcctcaagatggttccttcaattgtcggc |
318 |
Q |
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| T |
6008355 |
tggatttcttccacgtgtccatttttaacactaagcaaaagcaacatggcttgtgattgccatgtgtgacttcctaaagatggttccttcaattgtcggc |
6008454 |
T |
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| Q |
319 |
aaatatagatgtcactgcacacacaagccaacttacaaagtacacttgacattattctcattggtccttctccaatcatgcataaacacca |
409 |
Q |
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| T |
6008455 |
aaatatagatgtcactgcacacacaagccaacttacaaagtacacttgacattattctcattggtccttctccaatcatgcataaacacca |
6008545 |
T |
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