View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11342_high_15 (Length: 387)
Name: NF11342_high_15
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11342_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 378
Target Start/End: Original strand, 11622276 - 11622640
Alignment:
| Q |
14 |
ggacatcacatctgaagttgatagactgaaaacagagcacaaatccctttctgaagagtcacgcgaagtaaggttcttattatttgttcaatttgtcttt |
113 |
Q |
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| T |
11622276 |
ggacataacatctgaagttgatagactgaaaacagagcacaaatccctttctgaagagtcacgtgaagtaaggttcttattatttgttcaatttgtcttt |
11622375 |
T |
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| Q |
114 |
aagttcaagctttcgtgcagcttatttattcatttgattttatattcacagctaatactagaaaagactgaactccgagaagagaaagcgtctttaaaat |
213 |
Q |
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| T |
11622376 |
aagatcaagcttttgtgcagcttatttattcatttgattttatattcacagctaatacaagaaaagactgaactccgagaagagaaagcgtctttaaaat |
11622475 |
T |
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| Q |
214 |
ccgatatagaaaatcttaattcccagtatcagcagagagtaggagtcatgccaccatggactgcaattgaccattctgttgtcatgagtagcccctatac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11622476 |
ccgatatagaaaatcttaattcccagtatcagcagagagtaggagtcatgccgccatggactgcaattgaccattctgttgtcatgagtagcccttatac |
11622575 |
T |
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| Q |
314 |
gtaccccgttcctatgccaatgccaatccctccttgtccagtttccattcacccaccacctatgc |
378 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
11622576 |
gtaccccgttcctatgccaatgccaatccctgctggtccagtttccattcacccaccacctatgc |
11622640 |
T |
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