View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11342_high_17 (Length: 343)
Name: NF11342_high_17
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11342_high_17 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 15 - 328
Target Start/End: Complemental strand, 51773012 - 51772699
Alignment:
| Q |
15 |
atgaagtccttcttatcaaagacagtgcccaatatctgcaactataatatttatcatctcatttaagttctgtcttataatgtttgtcctcgcaacatga |
114 |
Q |
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| T |
51773012 |
atgaagtccttcttatcaaagacagtgcccaatatctgcaactataatatttatcatctcatttaagttcagtcttataatgtttgtcctcgcaacatga |
51772913 |
T |
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| Q |
115 |
agcttcattccagtccaactatttatattatgcacatatggtggacttttgatattcatctaagcttgagaaattgctttctcgagatagttgaatgttt |
214 |
Q |
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| T |
51772912 |
agcttcattccagtccaactatttatattatgcacatatggtggacttttgatattcatctaagcttgagaaattgctttctcgagatagttgaatgttt |
51772813 |
T |
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| Q |
215 |
tatgataattaaagacacccataaaccagaaatcaaaattgtccactgtgacgatgtttatgtacttttgtgttggcttctcaacattttgactttgatt |
314 |
Q |
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| T |
51772812 |
tatgataattaaagacacccataaaccagaaatcaaaattgtccactgtgacgatgtttatgtacttttgtgttggcttctcaacattttgactttgatt |
51772713 |
T |
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| Q |
315 |
cacacacttgatgt |
328 |
Q |
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| T |
51772712 |
cacacacttgatgt |
51772699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 178 - 326
Target Start/End: Complemental strand, 51804454 - 51804306
Alignment:
| Q |
178 |
gcttgagaaattgctttctcgagatagttgaatgttttatgataattaaagacacccataaaccagaaatcaaaattgtccactgtgacgatgtttatgt |
277 |
Q |
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| T |
51804454 |
gcttgagaaattgcctgctcgatatatttgaaagttttctgatattttaggacacccataagccagaaatcaaaattgtccattgtgactatgtttatgt |
51804355 |
T |
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| Q |
278 |
acttttgtgttggcttctcaacattttgactttgattcacacacttgat |
326 |
Q |
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| T |
51804354 |
acttttgtgttggcttctcaacattttgactctgcctcacacacttgat |
51804306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 180 - 326
Target Start/End: Complemental strand, 51808401 - 51808255
Alignment:
| Q |
180 |
ttgagaaattgctttctcgagatagttgaatgttttatgataattaaagacacccataaaccagaaatcaaaattgtccactgtgacgatgtttatgtac |
279 |
Q |
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| T |
51808401 |
ttgagaaattgcctgctcgagatatttgaaagttttctgatattttagaacacccataagccagaaatcaaaaccgtcttctgtaactatctttatgtac |
51808302 |
T |
|
| Q |
280 |
ttttgtgttggcttctcaacattttgactttgattcacacacttgat |
326 |
Q |
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| T |
51808301 |
ttttgtgttggcttctcaacattttgactttgattcacacacttgat |
51808255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 179 - 325
Target Start/End: Complemental strand, 51780684 - 51780538
Alignment:
| Q |
179 |
cttgagaaattgctttctcgagatagttgaatgttttatgataattaaagacacccataaaccagaaatcaaaattgtccactgtgacgatgtttatgta |
278 |
Q |
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|||| |||||||| | ||||||||| ||||| ||||| ||||| || ||||||||||||| ||||||||| || || |||||||| || || |||||||| |
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| T |
51780684 |
cttgtgaaattgcctgctcgagatatttgaaagttttctgatattttaagacacccataagccagaaatcgaagttatccactgtaactatatttatgta |
51780585 |
T |
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| Q |
279 |
cttttgtgttggcttctcaacattttgactttgattcacacacttga |
325 |
Q |
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||| || |||||||||||||||||||||||||| |||||||||||| |
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| T |
51780584 |
cttctgcgttggcttctcaacattttgactttgcctcacacacttga |
51780538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 51768127 - 51768085
Alignment:
| Q |
272 |
ttatgtacttttgtgttggcttctcaacattttgactttgatt |
314 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51768127 |
ttatgtccttttgtgttggcttctcaacattttgactttgatt |
51768085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 51768214 - 51768140
Alignment:
| Q |
166 |
atattcatctaagcttgagaaattgctttctcgagatagttgaatgttttatgataattaaagacacccataaac |
240 |
Q |
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| T |
51768214 |
atattcatctaaacttgagaaatcgccttttcgatatatttgaaagttttctgatatttgaagacacccaaaaac |
51768140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 180 - 325
Target Start/End: Complemental strand, 7327 - 7182
Alignment:
| Q |
180 |
ttgagaaattgctttctcgagatagttgaatgttttatgataattaaagacacccataaaccagaaatcaaaattgtccactgtgacgatgtttatgtac |
279 |
Q |
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|||||||||||| | ||||||||| ||||| ||||| ||||| || ||||||||||||| ||||||||| || || |||||||| || || ||||||||| |
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| T |
7327 |
ttgagaaattgcctgctcgagatatttgaaagttttctgatattttaagacacccataagccagaaatcgaagttatccactgtaactatatttatgtac |
7228 |
T |
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| Q |
280 |
ttttgtgttggcttctcaacattttgactttgattcacacacttga |
325 |
Q |
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|| || |||||||||||||||||||||||||| |||||||||||| |
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| T |
7227 |
ttctgcgttggcttctcaacattttgactttgcctcacacacttga |
7182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 326
Target Start/End: Original strand, 32908232 - 32908262
Alignment:
| Q |
296 |
caacattttgactttgattcacacacttgat |
326 |
Q |
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| T |
32908232 |
caacattttgactttgattcacacacttgat |
32908262 |
T |
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