View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11342_high_19 (Length: 331)

Name: NF11342_high_19
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11342_high_19
NF11342_high_19
[»] chr8 (9 HSPs)
chr8 (4-316)||(1795609-1795921)
chr8 (4-313)||(6231598-6231905)
chr8 (7-316)||(5185091-5185397)
chr8 (7-239)||(5195085-5195308)
chr8 (7-245)||(5198773-5199001)
chr8 (7-227)||(5177649-5177860)
chr8 (32-132)||(5207108-5207208)
chr8 (12-110)||(5171556-5171654)
chr8 (201-239)||(33861527-33861565)
[»] chr7 (3 HSPs)
chr7 (7-316)||(5178783-5179087)
chr7 (13-127)||(8306728-8306842)
chr7 (13-127)||(8551751-8551865)
[»] chr4 (4 HSPs)
chr4 (16-102)||(10203350-10203436)
chr4 (26-116)||(49611879-49611969)
chr4 (201-239)||(31921507-31921545)
chr4 (276-316)||(55558042-55558082)
[»] chr6 (6 HSPs)
chr6 (16-102)||(1192876-1192962)
chr6 (35-119)||(1187189-1187273)
chr6 (13-116)||(1197400-1197503)
chr6 (37-102)||(896776-896841)
chr6 (39-102)||(1181971-1182034)
chr6 (275-316)||(18857796-18857837)
[»] scaffold0356 (1 HSPs)
scaffold0356 (200-239)||(15437-15476)
[»] chr3 (3 HSPs)
chr3 (201-239)||(41763509-41763547)
chr3 (276-316)||(10001668-10001708)
chr3 (276-316)||(27275656-27275696)
[»] chr2 (7 HSPs)
chr2 (201-239)||(27194264-27194302)
chr2 (201-239)||(27844078-27844116)
chr2 (201-239)||(35611435-35611473)
chr2 (201-239)||(39441471-39441509)
chr2 (275-316)||(27510634-27510675)
chr2 (276-316)||(27193733-27193773)
chr2 (276-316)||(27843547-27843587)
[»] scaffold0029 (1 HSPs)
scaffold0029 (276-317)||(141181-141222)
[»] scaffold0003 (1 HSPs)
scaffold0003 (275-316)||(184069-184110)
[»] scaffold0002 (1 HSPs)
scaffold0002 (276-317)||(318648-318689)
[»] chr5 (4 HSPs)
chr5 (275-316)||(3691234-3691275)
chr5 (275-316)||(3875512-3875553)
chr5 (276-316)||(10026238-10026278)
chr5 (276-316)||(25541712-25541752)
[»] chr1 (1 HSPs)
chr1 (275-316)||(2330427-2330468)
[»] scaffold0262 (1 HSPs)
scaffold0262 (276-316)||(20264-20304)
[»] scaffold0225 (1 HSPs)
scaffold0225 (276-316)||(13213-13253)
[»] scaffold0118 (1 HSPs)
scaffold0118 (276-316)||(27638-27678)


Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 4 - 316
Target Start/End: Complemental strand, 1795921 - 1795609
Alignment:
Q  4 aaaggggatgactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaata 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1795921 aaaggggatgactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaata 1795822  T
Q  104 ttgatttcaagaccatgctagaattgttgccaaatggagaannnnnnnnnagctttatgttagaattttaatgttgctgacgctgccataaactcataga 203  Q
    |||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1795821 ttgatttcaagaccatgctagaattgttgccaaatggagaatttttttttagctttatgttagaattttaatgttgctgacgctgccataaactcataga 1795722  T
Q  204 catgttttttctttgaagtttgatgttacctcttaaatgcatgatgacacctttcttttgatatacactacggaaaatgatgaacggtatcgtagagata 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1795721 catgttttttctttgaagtttgatgttacctcttaaatgcatgatgacacctttcttttgatatacactacggaaaatgatgaacggtatcgtagagata 1795622  T
Q  304 gtaactcttagtt 316  Q
    |||||||||||||    
T  1795621 gtaactcttagtt 1795609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 4 - 313
Target Start/End: Original strand, 6231598 - 6231905
Alignment:
Q  4 aaaggggatgactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaata 103  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||| ||||||    
T  6231598 aaaggggatgactgcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcattgaagaatgataagaata 6231697  T
Q  104 ttgatttcaagaccatgctagaattgttgccaaatggagaannnnnnnnnagctttatgttagaattttaatgttgctgacgctgccataaactcataga 203  Q
    ||||||||||||||||||||||||||||||||||||||| |         ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6231698 ttgatttcaagaccatgctagaattgttgccaaatggagga---aaaattagctttatgttagaattttaatgttgctgacgctgtcataaactcataga 6231794  T
Q  204 catgttttttctttgaagtttgatgttacctcttaaatgcatgatgacacctttcttttgatat-acactacggaaaatgatgaacggtatcgtagagat 302  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||| ||| || |||||| |||||| |||||||  ||| ||||||||||||| |    
T  6231795 catgtttttactttgaagtttgatattacctcttaaatgcatgatgacacatttgttatgatataacactatggaaaattctgagcggtatcgtagagtt 6231894  T
Q  303 agtaactctta 313  Q
    |||| ||||||    
T  6231895 agtagctctta 6231905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 316
Target Start/End: Original strand, 5185091 - 5185397
Alignment:
Q  7 ggggatgactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaatattg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||    
T  5185091 ggggatgactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcaatgaagattgatgataatattg 5185190  T
Q  107 atttcaagaccatgctagaattgttgccaaatggagaannnnnnnnnagctttatgttagaattttaatgttgctgacgctgccataaactcatagacat 206  Q
    | |||||||||||||||||||||||||||| || ||||         |||||| ||||||| ||||||||||||||| |||| ||||||||||  |||||    
T  5185191 acttcaagaccatgctagaattgttgccaattgaagaa---gaaattagctttgtgttagagttttaatgttgctgatgctgtcataaactcagtgacat 5185287  T
Q  207 gttttttctttgaagtttgatgttacctcttaaatgcatgatgacacctttcttttgatatacactacggaaaatgatgaacggtatcgtagagatagta 306  Q
    |||||| |||  ||||||||||||||||||||||||||  ||||||| ||| ||||||||||||||| |||||||| ||||||||||||||||| |||||    
T  5185288 gtttttacttcaaagtttgatgttacctcttaaatgcacaatgacacatttgttttgatatacactatggaaaatgctgaacggtatcgtagagttagta 5185387  T
Q  307 actcttagtt 316  Q
    ||||||||||    
T  5185388 actcttagtt 5185397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 5195085 - 5195308
Alignment:
Q  7 ggggatgactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaatattg 106  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5195085 ggggatgactgcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaatattg 5195184  T
Q  107 atttcaagaccatgctagaattgttgccaaatggagaannnnnnnnnagctttatgttagaattttaatgttgctgacgctgccataaactcatagacat 206  Q
    |||||||||||||||||||| ||||||||| ||  |||         | |||||||||||||||||||||||      |||| ||| |||||||||||||    
T  5195185 atttcaagaccatgctagaactgttgccaactgatgaa---aaaattaactttatgttagaattttaatgtt------gctgtcatcaactcatagacat 5195275  T
Q  207 gttttttctttgaagtttgatgttacctcttaa 239  Q
    |||||| | |||||||||||| |||||||||||    
T  5195276 gtttttacgttgaagtttgattttacctcttaa 5195308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 5199001 - 5198773
Alignment:
Q  7 ggggatgactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaatattg 106  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5199001 ggggatgactgcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgataatattg 5198902  T
Q  107 atttcaagaccatgctagaattgttgccaaatggagaannnnnnnnnagctttatgttagaattttaatgttgctgacgctgccataaactcatagacat 206  Q
    |||||||||||||||||||| ||||||||| ||  |||         | |||||||||||||||||||||||      |||| ||| |||||||||||||    
T  5198901 atttcaagaccatgctagaactgttgccaactgatgaa---aaaattaactttatgttagaattttaatgtt------gctgtcatcaactcatagacat 5198811  T
Q  207 gttttttctttgaagtttgatgttacctcttaaatgcat 245  Q
    |||||| |||||||||||||| ||||||| |||||||||    
T  5198810 gtttttactttgaagtttgattttacctc-taaatgcat 5198773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 5177649 - 5177860
Alignment:
Q  7 ggggatgactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaatattg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  5177649 ggggatgactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcagtgaagattgatgataatattg 5177748  T
Q  107 atttcaagaccatgctagaattgttgccaaatggagaannnnnnnnnagctttatgttagaattttaatgttgctgacgctgccataaactcatagacat 206  Q
    | |||||||||||||||||||||||||||| |||||||         || ||||||||||||||||||||||      |||| ||||| ||||||||| |    
T  5177749 acttcaagaccatgctagaattgttgccaattggagaa---aaaattagttttatgttagaattttaatgtt------gctgtcataatctcatagacgt 5177839  T
Q  207 gttttttctttgaagtttgat 227  Q
    ||||||  |||||||||||||    
T  5177840 gtttttattttgaagtttgat 5177860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 5207108 - 5207208
Alignment:
Q  32 gtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaatattgatttcaagaccatgctagaattgtt 131  Q
    ||||||||| |||||||||||||||||||||| |||| |||||||  |||||  ||||||||||||||||| ||||||||||||||||| ||||||||||    
T  5207108 gtgatactaggtgttggtggcatggcttgaaggatgtaaaagtcacgagctctatgaagattgatgagaatgttgatttcaagaccatgttagaattgtt 5207207  T
Q  132 g 132  Q
    |    
T  5207208 g 5207208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 5171556 - 5171654
Alignment:
Q  12 tgactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaatattgattt 110  Q
    ||||||||| |||| |||| ||||||| |||||||||||||||||||||||| |||||||||| | ||||||  |||||||||| |||||| |||||||    
T  5171556 tgactgcttttgcatttcttgtgataccaagtgttggtggcatggcttgaaggatgtgaaagttacaagctctatgaagattgacgagaatgttgattt 5171654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 33861565 - 33861527
Alignment:
Q  201 agacatgttttttctttgaagtttgatgttacctcttaa 239  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  33861565 agacatgtttttactttgaagttttatgttacctcttaa 33861527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 316
Target Start/End: Original strand, 5178783 - 5179087
Alignment:
Q  7 ggggatgactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaatattg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||    
T  5178783 ggggatgactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcaatgaagattgatgataatattg 5178882  T
Q  107 atttcaagaccatgctagaattgttgccaaatggagaannnnnnnnnagctttatgttagaattttaatgttgctgacgctgccataaactcatagacat 206  Q
    ||||||||||||| |||||||||||||||| |||||||         |||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  5178883 atttcaagaccattctagaattgttgccaattggagaa---aaatttagctttatgttagaattttaatgttgttgacgctgtcataaactcatagacat 5178979  T
Q  207 gttttttctttgaagtttgatgttacctcttaaatgcatgatgacacctttcttttgatatacactacggaaaatgatgaacggtatcgtagagatagta 306  Q
    |||||| ||| |||||||||||||||||||||||||||||||| ||| ||| |||||  |||||||| |||||||| ||||  ||||||||||| |||||    
T  5178980 gtttttacttcgaagtttgatgttacctcttaaatgcatgatgccacatttgttttg--atacactatggaaaatgctgaatagtatcgtagagttagta 5179077  T
Q  307 actcttagtt 316  Q
    ||||||||||    
T  5179078 actcttagtt 5179087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 8306728 - 8306842
Alignment:
Q  13 gactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaatattgatttca 112  Q
    |||||||| ||||| |||| |||||| |||||||||||||||||||||||| || ||||||||| | ||||  |||| |||||||||||| ||||||| |    
T  8306728 gactgcttttgcagctctaatgatacaaagtgttggtggcatggcttgaaggatttgaaagtcacacgctcaatgaaaattgatgagaatgttgatttta 8306827  T
Q  113 agaccatgctagaat 127  Q
    | ||| || ||||||    
T  8306828 aaaccttgttagaat 8306842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 8551865 - 8551751
Alignment:
Q  13 gactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaatattgatttca 112  Q
    |||||||| ||||| ||||||||||| || |||||||||||||||||||||||| ||||||||  |  |||  |||| |||||||||||| ||||||| |    
T  8551865 gactgcttttgcagctctagtgataccaattgttggtggcatggcttgaagaatttgaaagtcgcacactcaatgaaaattgatgagaatgttgatttta 8551766  T
Q  113 agaccatgctagaat 127  Q
    | ||| || ||||||    
T  8551765 aaaccttgttagaat 8551751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 10203350 - 10203436
Alignment:
Q  16 tgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaat 102  Q
    ||||| |||| ||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||    
T  10203350 tgcttttgcatttctactgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataagctctaagaagattgatgagaat 10203436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 49611879 - 49611969
Alignment:
Q  26 gttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaatattgatttcaagac 116  Q
    ||||||||||||| |||||||||||||||||||||||| || ||||||||  ||  ||   ||| |||||||||||| ||||||| |||||    
T  49611879 gttctagtgataccaagtgttggtggcatggcttgaaggatttgaaagtctcaacttcaaagaaaattgatgagaatgttgattttaagac 49611969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 31921507 - 31921545
Alignment:
Q  201 agacatgttttttctttgaagtttgatgttacctcttaa 239  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  31921507 agacatgtttttactttgaagttttatgttacctcttaa 31921545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 55558082 - 55558042
Alignment:
Q  276 gaaaatgatgaacggtatcgtagagatagtaactcttagtt 316  Q
    ||||||| |||| |||||||||||| |||||||||||||||    
T  55558082 gaaaatgttgaatggtatcgtagagttagtaactcttagtt 55558042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 1192876 - 1192962
Alignment:
Q  16 tgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaat 102  Q
    ||||| |||| ||||  ||| ||||||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||    
T  1192876 tgcttttgcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataagctctaagaagattgatgagaat 1192962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 1187189 - 1187273
Alignment:
Q  35 atactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaatattgatttcaagaccat 119  Q
    |||| |||||||||||||||||||||||| |||||||||||| ||||||  ||||||||||||||||| ||  ||| ||||||||    
T  1187189 atacgaagtgttggtggcatggcttgaaggatgtgaaagtcacaagctctatgaagattgatgagaatgtttgttttaagaccat 1187273  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 1197400 - 1197503
Alignment:
Q  13 gactgcttgtgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaatattgatttca 112  Q
    |||||||| |||||||||  |||||| |||||||||||||||| ||||||| ||||||||||||  ||| |  ||||||| ||||||||| ||||||| |    
T  1197400 gactgcttttgcagttctgatgatacaaagtgttggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgttgatttta 1197499  T
Q  113 agac 116  Q
    ||||    
T  1197500 agac 1197503  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 896776 - 896841
Alignment:
Q  37 actaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaat 102  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||   | ||||||||||||||    
T  896776 actaagtgttggtggcatggcttgaaggatgtgaaagtcataagctctaaggagattgatgagaat 896841  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 1181971 - 1182034
Alignment:
Q  39 taagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaat 102  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||   ||||||||||||||||    
T  1181971 taagtgttggtggcatgacttgaaggatgtgaaagtcataagctctaagaagattgatgagaat 1182034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 316
Target Start/End: Original strand, 18857796 - 18857837
Alignment:
Q  275 ggaaaatgatgaacggtatcgtagagatagtaactcttagtt 316  Q
    |||||||| |||| |||||||||||| |||||||||||||||    
T  18857796 ggaaaatgttgaatggtatcgtagagttagtaactcttagtt 18857837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 15476 - 15437
Alignment:
Q  200 tagacatgttttttctttgaagtttgatgttacctcttaa 239  Q
    ||||||||||||| ||||||||||| ||||||||||||||    
T  15476 tagacatgtttttactttgaagttttatgttacctcttaa 15437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 41763547 - 41763509
Alignment:
Q  201 agacatgttttttctttgaagtttgatgttacctcttaa 239  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  41763547 agacatgtttttactttgaagttttatgttacctcttaa 41763509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 10001668 - 10001708
Alignment:
Q  276 gaaaatgatgaacggtatcgtagagatagtaactcttagtt 316  Q
    ||||||| |||| |||||||||||| |||||||||||||||    
T  10001668 gaaaatgttgaatggtatcgtagagttagtaactcttagtt 10001708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 27275656 - 27275696
Alignment:
Q  276 gaaaatgatgaacggtatcgtagagatagtaactcttagtt 316  Q
    ||||||| |||| |||||||||||| |||||||||||||||    
T  27275656 gaaaatgttgaatggtatcgtagagttagtaactcttagtt 27275696  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 27194264 - 27194302
Alignment:
Q  201 agacatgttttttctttgaagtttgatgttacctcttaa 239  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  27194264 agacatgtttttactttgaagttttatgttacctcttaa 27194302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 27844078 - 27844116
Alignment:
Q  201 agacatgttttttctttgaagtttgatgttacctcttaa 239  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  27844078 agacatgtttttactttgaagttttatgttacctcttaa 27844116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 35611435 - 35611473
Alignment:
Q  201 agacatgttttttctttgaagtttgatgttacctcttaa 239  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  35611435 agacatgtttttactttgaagttttatgttacctcttaa 35611473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 39441509 - 39441471
Alignment:
Q  201 agacatgttttttctttgaagtttgatgttacctcttaa 239  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  39441509 agacatgtttttactttgaagttttatgttacctcttaa 39441471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 316
Target Start/End: Original strand, 27510634 - 27510675
Alignment:
Q  275 ggaaaatgatgaacggtatcgtagagatagtaactcttagtt 316  Q
    |||||||| |||| |||||||||||| |||||||||||||||    
T  27510634 ggaaaatgctgaatggtatcgtagagttagtaactcttagtt 27510675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 27193733 - 27193773
Alignment:
Q  276 gaaaatgatgaacggtatcgtagagatagtaactcttagtt 316  Q
    ||||||| |||| |||||||||||| |||||||||||||||    
T  27193733 gaaaatgctgaatggtatcgtagagttagtaactcttagtt 27193773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 27843547 - 27843587
Alignment:
Q  276 gaaaatgatgaacggtatcgtagagatagtaactcttagtt 316  Q
    ||||||| |||| |||||||||||| |||||||||||||||    
T  27843547 gaaaatgctgaatggtatcgtagagttagtaactcttagtt 27843587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 141222 - 141181
Alignment:
Q  276 gaaaatgatgaacggtatcgtagagatagtaactcttagttg 317  Q
    ||||||| |||| |||||||||||| ||||||||||||||||    
T  141222 gaaaatgttgaatggtatcgtagagttagtaactcttagttg 141181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 316
Target Start/End: Original strand, 184069 - 184110
Alignment:
Q  275 ggaaaatgatgaacggtatcgtagagatagtaactcttagtt 316  Q
    |||||||| |||| |||||||||||| |||||||||||||||    
T  184069 ggaaaatgttgaatggtatcgtagagttagtaactcttagtt 184110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 318689 - 318648
Alignment:
Q  276 gaaaatgatgaacggtatcgtagagatagtaactcttagttg 317  Q
    ||||||| |||| |||||||||||| ||||||||||||||||    
T  318689 gaaaatgttgaatggtatcgtagagttagtaactcttagttg 318648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 316
Target Start/End: Original strand, 3691234 - 3691275
Alignment:
Q  275 ggaaaatgatgaacggtatcgtagagatagtaactcttagtt 316  Q
    |||||||| |||| |||||||||||| |||||||||||||||    
T  3691234 ggaaaatgttgaatggtatcgtagagttagtaactcttagtt 3691275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 316
Target Start/End: Complemental strand, 3875553 - 3875512
Alignment:
Q  275 ggaaaatgatgaacggtatcgtagagatagtaactcttagtt 316  Q
    |||||||| |||| |||||||||||| |||||||||||||||    
T  3875553 ggaaaatgttgaatggtatcgtagagttagtaactcttagtt 3875512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 10026238 - 10026278
Alignment:
Q  276 gaaaatgatgaacggtatcgtagagatagtaactcttagtt 316  Q
    ||||||| |||| |||||||||||| |||||||||||||||    
T  10026238 gaaaatgttgaatggtatcgtagagttagtaactcttagtt 10026278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 25541752 - 25541712
Alignment:
Q  276 gaaaatgatgaacggtatcgtagagatagtaactcttagtt 316  Q
    ||||||| |||| |||||||||||| |||||||||||||||    
T  25541752 gaaaatgttgaatggtatcgtagagttagtaactcttagtt 25541712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 316
Target Start/End: Original strand, 2330427 - 2330468
Alignment:
Q  275 ggaaaatgatgaacggtatcgtagagatagtaactcttagtt 316  Q
    |||||||| |||| |||||||||||| |||||||||||||||    
T  2330427 ggaaaatgttgaatggtatcgtagagttagtaactcttagtt 2330468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 20264 - 20304
Alignment:
Q  276 gaaaatgatgaacggtatcgtagagatagtaactcttagtt 316  Q
    ||||||| |||| |||||||||||| |||||||||||||||    
T  20264 gaaaatgttgaatggtatcgtagagttagtaactcttagtt 20304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 13253 - 13213
Alignment:
Q  276 gaaaatgatgaacggtatcgtagagatagtaactcttagtt 316  Q
    ||||||| |||| |||||||||||| |||||||||||||||    
T  13253 gaaaatgttgaatggtatcgtagagttagtaactcttagtt 13213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 27678 - 27638
Alignment:
Q  276 gaaaatgatgaacggtatcgtagagatagtaactcttagtt 316  Q
    ||||||| |||| |||||||||||| |||||||||||||||    
T  27678 gaaaatgttgaatggtatcgtagagttagtaactcttagtt 27638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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