View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11342_high_22 (Length: 276)
Name: NF11342_high_22
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11342_high_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 28995857 - 28995613
Alignment:
| Q |
18 |
gagtgaggtgttatttgtctatacgtaacgcggaattttccagtttggtatatacgcgtttaatttttcttcattttgatttttctagagctatttctag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28995857 |
gagtgaggtgttatttgtctatacgtaacgcggaattttccagtttggtatatacgcgtttaatttttcttcattttgatttttctagagctatttctag |
28995758 |
T |
|
| Q |
118 |
attaccatatgtagcaatagcattaattcaaagattgatttagtgttcggtggataaggtcgatagacggttcttttataccatttcaaattgctgacaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28995757 |
attaccatatgtagcaatagcattaattcaaagattgatttagtgttcggtggataaggtcgatagacggttcttttataccatttcaaattgctgacaa |
28995658 |
T |
|
| Q |
218 |
cttcattattgttttttccttcaaaaaacttcattattatttgta |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28995657 |
cttcattattgttttttccttcaaaaaacttcattattatttgta |
28995613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 29007848 - 29007744
Alignment:
| Q |
18 |
gagtgaggtgttatttgtctatacgtaacgcggaattttccagtttggtatatacgcgtttaatttttcttcattttgatttttctagagctatttctag |
117 |
Q |
| |
|
|||||||||||| | ||||| ||||||| | |||||||| |||||||||| ||||||||||||||||| | ||||||||||||| ||| ||||||| |
|
|
| T |
29007848 |
gagtgaggtgttgtgtgtctgtacgtaatgaagaattttctcgtttggtataaccgcgtttaatttttctt-agtttgatttttctacggctgtttctag |
29007750 |
T |
|
| Q |
118 |
attacc |
123 |
Q |
| |
|
|||||| |
|
|
| T |
29007749 |
attacc |
29007744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University