View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11342_high_24 (Length: 261)
Name: NF11342_high_24
Description: NF11342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11342_high_24 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 30851105 - 30850841
Alignment:
| Q |
1 |
agaaccgaaaggaatgacatgaaaccaaagcatcacattcaataagacttatactttgactttagaaagtattaatacatactcaaacattgacacaaca |
100 |
Q |
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| T |
30851105 |
agaaccgaaaggaatgacatgaaaccaaagcatcacattcaataagacttatactttgactttagaaagtactaatacatactcaaacattgacacaaca |
30851006 |
T |
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| Q |
101 |
ctgacacgtagacaccaatggtagctatatttgtcggtgtatgccgatgcactaaaatatactcaaacattgacacacaactgaca----tgtagacacc |
196 |
Q |
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| T |
30851005 |
ctaacacgtagacaccaatggtaactatatttgtcagtgtatgctgatgcactaaaatatactcaaacattgacacaggactgacatgtatgtagacacc |
30850906 |
T |
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| Q |
197 |
aatggtaactacatttgtcagtgtgtgtcgatattagatcccataacgtgtcagacaccagacac |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
30850905 |
aatggtaactacatttgtcagtgtgtgtcgatattagaccccataacgtgtcagacacgagacac |
30850841 |
T |
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